Query= MSMg01no171_e23.b1 MSMg01no171_e23.b1 CHROMAT_FILE:
MSMg01no171_e23.b1 PHD_FILE: MSMg01no171_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:30 2005
(307 letters)
>mm_chr3_102997922_102998628
Length = 707
Score = 522 bits (270), Expect = e-153
Identities = 290/302 (96%), Gaps = 9/302 (2%)
Strand = Plus / Plus
Query: 6 aattctcagctcattcatgacctattcctaccgactgtgagaaccagcctgaccgccagc 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctcagctcattcgtgacctattcctaccgactgtgagaaccagcctgaccgccagc 265
Query: 66 ctcgccagagcctgccgaatacactaagccctttgttccctaaaagtcagttacggcctt 125
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 266 ctcgccagagcctgcggaatacactaagccctttgttccctaaaagtcagttatggcctt 325
Query: 126 ttcccctgactgcacccgaaatgggctttgtaaccatcagtgaaactaaaacagacctta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcccctgactgcacccgaaatgggctttgtaaccatcagtgaaactaaaacagacctta 385
Query: 186 acctactgttattcagcttgtttttaactggggacttgccttcatccatccatagaaaca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acctactgttattcagcttgtttttaactggggacttgccttcatccatccatagaaaca 445
Query: 246 gactattattattatcattattattattattattattattattattattaatttattttt 305
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 446 gactattattattat---------tattattattattattattattattaatttattttt 496
Query: 306 gg 307
||
Sbjct: 497 gg 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_e23.g1 MSMg01no171_e23.g1 CHROMAT_FILE:
MSMg01no171_e23.g1 PHD_FILE: MSMg01no171_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:30 2005
(299 letters)
>mm_chr3_103151606_103152304
Length = 699
Score = 561 bits (290), Expect = e-164
Identities = 296/298 (99%), Gaps = 2/298 (0%)
Strand = Plus / Minus
Query: 1 accattagtagttaatacaattccccaaggcaggtaaaaccaagtattaatcctctgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 accattagtagttaatacaattccccaaggcaggtaaaaccaagtattaatcctctgctt 318
Query: 61 ttcacagactacactcaggttcaaaatgaacaagattcccctctctttgatcaaattgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcacagactacactcaggttcaaaatgaacaagattcccctctctttgatcaaattgct 258
Query: 121 aaccccgtcatcccccccaccccaccccacaaagaacaccttccctttcatttttccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaccccgtcatcccccccaccccaccccacaaagaacaccttccctttcatttttccttt 198
Query: 181 tatcttttttgagaaagggtttcactatgcaggtctgacttgtttacaactcctatatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tatcttttttgagaaagggtttcactatgcaggtctgacttgtttacaactcctatatag 138
Query: 241 accatactagccgccactgtgctgcctctggctcacaagatc-cccccccc-cccccc 296
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 137 accatactagccgccactgtgctgcctctggctcacaagatctccccccccgcccccc 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
