BAC Information

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BAC

Clone NameMSMg01-171F05
Chromosome3 (Build37)
Map Location 149,918,654 - 149,918,967
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381483, LOC100040620, LOC100040633
Downstream geneLOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171F05.T7 (MSMg01no171_f05.b1)MSMg01-171F05.TJ (MSMg01no171_f05.g1)
ACCAG367608AG367609
length760714
length of high quality
(start - end)
317 (47 - 363)34 (247 - 280)
definitionCHROMAT_FILE: MSMg01no171_f05.b1 PHD_FILE: MSMg01no171_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:31 2005CHROMAT_FILE: MSMg01no171_f05.g1 PHD_FILE: MSMg01no171_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGAGTTTCCCATGAACTTGGTAACAGCAATATCATTTGCTTTC
AGTGCTCTTAACTCTGAATTTTCTTTACATTTTGGCATCAAAGTTATTTA
GTGTTGTTTGGTCCTCAGTGTCTTCAATGTAAGGTTTCCCCAAGTCGCAA
TAATTAAACAGAACGTTGGCGGATTAACCATCTCTCCAGGCTCTCAGTTA
TTCCTCTTTCACAATATCATTAATGCCTTTACTACTATCTAACTAATGTA
GAAGTAGACAAAGAACTTCCAAGTTTCTACAATTGTTATCCAAACATTGG
CACATGCTTATTATATTTTGTTTCCACCCCNACCACCCCCTTTTTTCCCT
TAGGGTTAGGGGGAAACGAGAGACCCATAGAGAGAAAGAGAGAGAGAGAG
AGAGATAGAGAGAGAGAGAGAGAGACACATTTTCTTCCCCCCTTATTTTT
TTAATTAAATCCCGCTTTTATTTAACCCCCCCTCTCCCTCTATTTTTTTT
CACAATTATTCTCTTTTCAAAATACCTCAATAACCTTTGCATTTTTTTTT
TTTTTTTTCCCCCTTTTTTCCACTTTATCAAGCCTTTTTTTTATTTTCAC
CCTTTTTTTCCTCACCTGTTCATTTTTTCACTCTCTATTTTACCCCTTAA
TTATCAACACCCTTTTTTCTCCCACCCCTTTTTATCAACCCCTTCTTTTT
TTCGCCCCTT
AATGAAGTGGGAGGCCTGGGGGCGCCTTTTCCCAACNGNAGGNGAANNAN
AGAATGACGGCAGGNGGGGGGGGANNNNNANGAGNCNGNANNAACANNCG
NAGAAATTTTGCCAACAAAAAAGAGAGANNNAAGCGGGGGGANGGNNCNG
GNNNAAANNGGAAGGANNGAGNNNAGGAAAAAAAAACNAAAAGGGGAAAA
AANAAGAAANCCAAAAGAGGGNAAAGAAAAGGAAGGGTTTTTTTATATGT
TTTAGNAATTATTTATTCTTCTTTTTAGAANAGTCTGGTCAGATCCCAGG
CTTATTGATGATTTGNCAAAACCGCAGCCAGGAAAAAGAGGACTTTTTTA
TTTCCCACCCCCCCCCCTTCACTGATGTATAGTGTGCAAAAAAATCTTCC
ATTCTTGAAAATAAGAAACTTATCTTTAACAGAAATTTTAGTTATATGAA
AAACTACTTCTCAATTGTTAACCCTGAATCAGTAAAAATAGAAAGTCTTT
TCCTAACACTATGTTTTTTAGGGTAAAACCTATTTTCTTCTAAGAATTTC
CATCCTTCAAGATTCACAGACCAAGAATTGATCTAAAAATTAGAGTATAT
ATCAGTAAATTCCTAGTCCTGCACAGGGAGAGCTGTGTTTTTTTATTTCA
AATGTCATAACCATAACATGGTTTTTGTTTTGTAAGGATAATTGAGTCAG
TTGTAACAGTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_f05.b1 MSMg01no171_f05.b1 CHROMAT_FILE:
MSMg01no171_f05.b1 PHD_FILE: MSMg01no171_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:31 2005
         (317 letters)



>mm_chr3_149918450_149919167
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggagtttcccatgaacttggtaacagcaatatcatttgctttcagtgctctta 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggagtttcccatgaacttggtgacagcaatatcatttgctttcagtgctctta 264

                                                                       
Query: 65  actctgaattttctttacattttggcatcaaagttatttagtgttgttt-ggtcctcagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 actctgaattttctttacattttggcatcaaagttatttagtgttgttttggtcctcagt 324

                                                                       
Query: 124 gtcttcaatgtaaggtttccccaagtcgcaataattaaacagaacgttggcggattaacc 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gtcttcaatgtaaggtttccccaagtcgcaataattaaacagaacattggcggattaacc 384

                                                                       
Query: 184 atctctccaggctctcagttattcctctttcacaatatcattaatgcctttactactatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctctccaggctctcagttattcctctttcacaatatcattaatgcctttactactatc 444

                                                                       
Query: 244 taactaatgtagaagtagacaaagaacttccaagtttctacaattgttatccaaacattg 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 taactaatgtagaagtagacaaagaacttccaagtttctacagttgttatccaaacattg 504

                         
Query: 304 gcacatgcttatta 317
           ||||||||||||||
Sbjct: 505 gcacatgcttatta 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)