BAC Information

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BAC

Clone NameMSMg01-171L04
Chromosome3 (Build37)
Map Location 47,502,492 - 47,502,803
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171L04.T7 (MSMg01no171_l04.b1)MSMg01-171L04.TJ (MSMg01no171_l04.g1)
ACCAG367856AG367857
length742740
length of high quality
(start - end)
318 (48 - 365)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no171_l04.b1 PHD_FILE: MSMg01no171_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:58 2005CHROMAT_FILE: MSMg01no171_l04.g1 PHD_FILE: MSMg01no171_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTACATTCACAATGACATAGGTATAGACATACAATAGTCATA
ATCAGAAGAGTTTATAAATTCCTGAGGGGCCTTGTAAGCCTTGGAAGGGG
AGAGTGATGGGAAGTGTGAATGACATAGGCACAGTGTTCACATATAAATT
TCTCAACCTAAATCCATAAAACATAAAATATGAAAATCATGAACAAGGAA
AGGAAAAGAAAGCAGATTGCTTCATAATGAATAAATACATATACATTCAG
TAAAATAAACTAAAGGTAATGACAGGGAATATAAAGCATTTCAATAAGAT
AAAGTAAATTCATCATCAAAAGCACTCGCCCCACACTGAAAAATAAAGAG
GAATAAACATCATGCACAAGACGGGTCATATCAACTTCTTTCTGTATCTC
AAAAGTTAAAGACAAAAGATTATATACCGGAGATATTAGGGGAGATTTGT
GTAGTGTGTTGGATGACTTCCTTTCTGCTTTGTCTCCGCTTTGCTTCTCT
CTTTTTCCTGTTTTCCACGCATTCTCCATTTTGTTCCCCTTCTTTTGACT
CTCCCTCACGCTTCTTTGTTTCCTATTTTCACCTTCTCTTTATTTCCTAC
CGTTGCCTCCTTCTCGCCTCGTTTACCGCTTTTTGCTTGTTCTTTCCTTT
TCATCTTACATTTCCCATACCTCCGCTCTTACATTTTACCTN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCTCACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTACATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACTGGAGGAT
CCAGCAATATTTCTCCTGGGCCCCCCCCCCCCACATGTCCCAACCGGTAA
GAAGGACACATGCTCCACTATGTTCATAGAAAACTTATTTATAATACCCA
GAAGCTGGAAAGAACCCAGATGCTCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTT
GCTAAACACATGAAACTCAAGAAAAAGAAGACTGAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_l04.b1 MSMg01no171_l04.b1 CHROMAT_FILE:
MSMg01no171_l04.b1 PHD_FILE: MSMg01no171_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:58 2005
         (318 letters)



>mm_chr3_47502289_47503006
          Length = 718

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttacattcacaatgacataggtatagacatacaatagtcataatcagaagag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttacattcacaatgacataggtatagacatacaatagtcataatcagaagag 263

                                                                       
Query: 64  tttataaattcctgaggggccttgtaagccttggaaggggagagtgatgggaagtgtgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttataaattcctgaggggccttgtaagccttggaaggggagagtgatgggaagtgtgaa 323

                                                                       
Query: 124 tgacataggcacagtgttcacatataaatttctcaacctaaatccataaaacataaaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacataggcacagtgttcacatataaatttctcaacctaaatccataaaacataaaata 383

                                                                       
Query: 184 tgaaaatcatgaacaaggaaaggaaaagaaagcagattgcttcataatgaataaatacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaaatcatgaacaaggaaaggaaaagaaagcagattgcttcataatgaataaatacat 443

                                                                       
Query: 244 atacattcagtaaaataaactaaaggtaatgacagggaatataaagcatttcaataagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atacattcagtaaaataaactaaaggtaatgacagggaatataaagcatttcaataagat 503

                       
Query: 304 aaagtaaattca 315
           ||||||||||||
Sbjct: 504 aaagtaaattca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)