Query= MSMg01no172_a03.b1 MSMg01no172_a03.b1 CHROMAT_FILE:
MSMg01no172_a03.b1 PHD_FILE: MSMg01no172_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:22 2005
(270 letters)
>mm_chr3_115278505_115279174
Length = 670
Score = 507 bits (262), Expect = e-148
Identities = 265/266 (99%)
Strand = Plus / Plus
Query: 5 gaattcaggtggccacagaggccagaaaagggcatcagatcctctggaatgaaagttgca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtggccacagaggccagaaaagggcatcagatcctctggaatgaaagttgca 264
Query: 65 gaaggttgtaagtcacttgacatgggtgctgggaacagaacctctattttttgttttaag 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaggttgtaagtcacttgacatgggtgctgggaacagaacctctattttttgttttaag 324
Query: 125 atacagtgactaataaactatgaaaggctagtgatggagttcactggcaaagtacttctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacagtgactaataaactatgaaaggctagtgatggagttcactggcaaagtacttctg 384
Query: 185 cagcataagacagttgtgggttcaatgccctgcacaaacaaatttaaattaaagttaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagcataagacagttgtgggttcaatgccctgcacaaacaaatttaaattaaagttaaat 444
Query: 245 attaaaaacaaaatgttaggtatcag 270
||||||||||||||||||||||||||
Sbjct: 445 attaaaaacaaaatgttaggtatcag 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_a03.g1 MSMg01no172_a03.g1 CHROMAT_FILE:
MSMg01no172_a03.g1 PHD_FILE: MSMg01no172_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:22 2005
(299 letters)
>mm_chr3_115428525_115429224
Length = 700
Score = 547 bits (283), Expect = e-160
Identities = 295/299 (98%), Gaps = 1/299 (0%)
Strand = Plus / Minus
Query: 1 aatagagacgaaataagtgctgaagaaagtaaaactgaaatatgctggacat-aaaaaaa 59
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 499 aatagagacgaaataagtgctgaagaaagtaaaactgaaatatgctggagataaaaaaaa 440
Query: 60 agtgcaaccagccaaacaaaaaccttgatggaaaggcttagaagagcatggactgtgtaa 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 agtgcaaccagccaaacaaaaacctcgatggaaaggcttagaagagcatggactgtgtaa 380
Query: 120 aacaggattgggactggaagacaagggaaaagagttgggtcactcagtactggtccatga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aacaggattgggactggaagacaagggaaaagagttgggtcactcagtactggtccatga 320
Query: 180 caacctttttaaaatgcatgaatggaacactggagagtttgggaggactgtgaaaacatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caacctttttaaaatgcatgaatggaacactggagagtttgggaggactgtgaaaacatc 260
Query: 240 tacccttcaaatcatgagcttaggaaaaagaaagaatgtcagaagaaatgcattgaaag 298
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taaccttcaaatcatgagcttaggaaaaagaaagaatgtcagaagaaatgcattgaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space: 200390
Effective search space used: 200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
