BAC Information

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BAC

Clone NameMSMg01-172C06
Chromosome3 (Build37)
Map Location 39,058,842 - 39,059,075
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172C06.T7 (MSMg01no172_c06.b1)MSMg01-172C06.TJ (MSMg01no172_c06.g1)
ACCAG368150AG368151
length718717
length of high quality
(start - end)
316 (46 - 361)234 (129 - 362)
definitionCHROMAT_FILE: MSMg01no172_c06.b1 PHD_FILE: MSMg01no172_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:32 2005CHROMAT_FILE: MSMg01no172_c06.g1 PHD_FILE: MSMg01no172_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTACTATTATTGTAAGTGCCAGTGATGTTACCCAGTGAGGAGC
TAGACTCCCCTTAGAATTTTTGCACCATTCTTAGATTAAGAGGCACATGA
GGCACATGAGGGCCACAAGCAGAACAGAATTCATAACAGCACGAAGGGCT
CAGGACACTTGGCACTTGGGCCATGCCTCTCCTGGGAACAGCCATAGTGG
CTGTGCTATCTGATGGGGACACGTTCCATGAATTTTAAAGCCTCGCATGA
CTCTCGGCATCAGGTGACCCCTGCCTCATATTCTCCTGTGATTTCTTGAA
GCTCATCATTTAAGTCCTCATAAAGCGAAACCACGCATACATTCTCCATC
TTTCTCTAGAACATGTGAGTTTGACAAAATAAACTGAGAAGCTGAGGGTC
TGAGTTATAAAGCTGTAAGACTTAATGATGTAAACTCTAGCAAGACTTTT
AAATTAGAGTGCACACGAAAGTATTTCAGAACAAAACCAATAAGGCCCAT
AGGAAAGGTCACCTGGAGATTGACTGCCCACACCTGAGTTAGAGTCAGCC
CTTGCCTCCTGGACCTGGGTGGAAGTATTTGTAGTTTTTCTATACGTGTT
ACTTTCAAGACTGTGACTATCAAAGACCCCGTGAAGATGACTGATTTCAC
GCCCTTTAGGATTCAGTN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCCCATGGGCACCCTGGATGC
TGGGGGCTGAAGTGGTGATGGTACCACATCTCATTTGCATTGCTGCACAC
TGCTGAGGGAGAAGGTCTGCCCCCTGCCTGACAGCTACCCTCTACTGACT
TCTGACAAGGCTGACACCAAGTCTGAAACATTTTCCAAACGTGGCTTCTG
TCCAGAGGGAACTCATCTCCAGAATGTTTACCTCTATGCTAACAACTGAG
GTTCTATGCCCCAAGCTGCTGATGATACATTTTTTGCTGGATCAGTGGAG
TGGTTGTATGTGTTCATTTTCCCCANGCTGCCATGCAGCCCTTCCAATTT
CATAGAATTCTCTTCTTCCCACACCAAAAAATAAAGAAGCTTAGATTGGC
TTCAAAATCACTATGTCTTTAGAGATAATGTTGGATTCTGGTTCCTCTTG
CCTCTCCCTCTGGAGCGCTGGGATCACATCTGTGTACCAGCACTCCTTCG
CATGTGCTGCTGGCTTTAACCCAGCGTTTCCTGCACAATAGTAATCACTC
TACCAAACAGGGCTCATCCCCACCCATCATTTTTATACTCTGTACCCCTT
AATCGATTTTATTCAGCCTTTACAACGAACTAGTTTGCCGAATTACCAGT
TCTCTCATTGCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_c06.g1 MSMg01no172_c06.g1 CHROMAT_FILE:
MSMg01no172_c06.g1 PHD_FILE: MSMg01no172_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:32 2005
         (234 letters)



>mm_chr3_39058642_39059275
          Length = 634

 Score =  416 bits (215), Expect = e-121
 Identities = 230/235 (97%), Gaps = 2/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcatttgcattgctgcacactgctgagggagaaggtctgccccctgcctgacagctac 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcatctgcattgctgcacactgctgagggagaaggtctgccccctgcctgacagctac 260

                                                                       
Query: 61  cctctactgacttctgacaaggctgaca-ccaagtctgaaacattttccaaacgtggctt 119
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct: 261 cctctactgacttctgacaaggctg-caaccaagtctgaaacattttccaaacgtggttt 319

                                                                       
Query: 120 ctgtccagagggaactcatctccagaatgtttacctctatgctaacaactgaggttctat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgtccagagggaactcatctccagaatgtttacctctatgctaacaactgaggttctat 379

                                                                  
Query: 180 gccccaagctgctgatgatacattttttgctggatcagtggagtggttgtatgtg 234
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gccccaagctgctgttgatacattttttgctggatcagtggagtggttgtatgtg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)