BAC Information

Click to search

BAC

Clone NameMSMg01-172E20
Chromosome3 (Build37)
Map Location 154,499,816 - 154,500,123
singlet/doubletsinglet
Overlap geneTnni3k
Upstream geneAsb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
Downstream geneFpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172E20.T7 (MSMg01no172_e20.b1)MSMg01-172E20.TJ (MSMg01no172_e20.g1)
ACCAG368258AG368259
length709711
length of high quality
(start - end)
312 (46 - 357)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no172_e20.b1 PHD_FILE: MSMg01no172_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:44 2005CHROMAT_FILE: MSMg01no172_e20.g1 PHD_FILE: MSMg01no172_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAACCATTGCAATAAAAGGCCCATTACTGTATAAGAAATGAGTC
CAGATTTAGGAGTCTCCAGCACCCTGTATGTTTTAGTCGCTGTTTTACCT
TGTTGTTTCTATGGGCCAGGAGCCCAGCACAGATTAATTGGTTCTTTTCT
GAGTCTCATCACACTGAAATCAAGGTGCCCAATGTAGACAGCTCACAAAC
TGGATGTGCGGTTTTCTCCTGGCCAGCATGGGCTCATGTCTCTGACTGAT
TCCTCTGTGCTGTTCCTGATAGGATAGTCCCCACAGGACAACCTTCCTCT
AGGATAATATTTATTTACCCCCCACCCCCAACAGCTCCTTGTCTCTACAC
GTTCTGTACATTCCCCCTGCAGAGGGATGATGCATACATGTATAATGGGC
AAGGATCTCATGGGTCATTCTGGAACCCTGCCTGTCACAAGCAGGCATTC
AAAATCAAAGGGATGCTAGGGGAGGTGACTCCAGGATCCTGTGTGAACTA
CCTAAGCCCTGAACCACATACGCACAGGCTATACTCTCTGTTGCCTAGTG
AGGTCACATTTATGGATCATAAGGCCTTGTTCTGAATATTCTCTCACAGT
AGAATTGTCTGACACTTATGCTCTGCCTAAGAGAAAATCTTCACACTCTG
CAGATCTAN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCAGATCTAGTTATCATTCCTTGG
GGATCTTTAAGTTTCCTTGTTCATAGAGTTATTTCACTTGCAAACAGGGA
TAATTTGAGTCCTTGCTTGCTATTTATAATTCTTTTATTTGTTTTTCCAT
TCTTAACTCTGCTGGCTAAAGTTTTCTGTACAGAACTGAATAGCAGAAGT
GGTGGGGAGCATTGTTGTTTCACTCCTGGCCTTACAAGAAATACCCATAG
GCCTTCACCATCTCATATAATGTTGATTGTGGGTTTCTCATAAATGGACC
TTGTTTGTTATTCTTTTCTAGACAANCCCACAGTGGGGCTTCAGAAAACT
GAAAATAGATCTACCACATGATTTAAATTCCCTAGTTCTAGATAGATAGG
CAGTAGATATTAATACTATTATTAATTAATAATTGTGAGATACTTAAGAT
ATATCAGTATCCATATGTCCATTGCATAATTATTTAAAAGAGCTGAGCTA
TGAAATCAGTCTAGCTACCTATCAACAAATGAATAAAGAAAGAATCCTAT
GCATACAACATAGCATTGTTCTTTTATAAAGAAAGATGGACCTGGAAGCC
ATCATCTGAGGGAAATAAGTGAAAAGACAGAAAGAAAACTCTGTCTTTGC
TCTGTGTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_e20.b1 MSMg01no172_e20.b1 CHROMAT_FILE:
MSMg01no172_e20.b1 PHD_FILE: MSMg01no172_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:44 2005
         (312 letters)



>mm_chr3_154499612_154500323
          Length = 712

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaccattgcaataaaaggcccattactgtataagaaatgagtccagatttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaccattgcaataaaaggcccattactgtataagaaatgagtccagatttag 264

                                                                       
Query: 65  gagtctccagcaccctgtatgttttagtcgctgttttaccttgttgtttctatgggccag 124
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtctccagcaaactgtatgttttagtcgctgttttaccttgttgtttctatgggccag 324

                                                                       
Query: 125 gagcccagcacagattaattggttcttttctgagtctcatcacactgaaatcaaggtgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagcccagcacagattaattggttcttttctgagtctcatcacactgaaatcaaggtgcc 384

                                                                       
Query: 185 caatgtagacagctcacaaactggatgtgcggttttctcctggccagcatgggctcatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatgtagacagctcacaaactggatgtgcggttttctcctggccagcatgggctcatgt 444

                                                                       
Query: 245 ctctgactgattcctctgtgctgttcctgataggatagtccccacaggacaaccttcctc 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 ctctgactgattcctctgtgctgttcctgagaggatagtccccacaggacaaccttcctc 504

                   
Query: 305 taggataa 312
           ||||||||
Sbjct: 505 taggataa 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)