BAC Information

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BAC

Clone NameMSMg01-172H10
Chromosome3 (Build37)
Map Location 117,350,533 - 117,350,812
singlet/doubletsinglet
Overlap gene4833424O15Rik
Upstream geneHiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneEG668759, Snx7, LOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172H10.T7 (MSMg01no172_h10.b1)MSMg01-172H10.TJ (MSMg01no172_h10.g1)
ACCAG368369AG368370
length734697
length of high quality
(start - end)
319 (45 - 363)280 (81 - 360)
definitionCHROMAT_FILE: MSMg01no172_h10.b1 PHD_FILE: MSMg01no172_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:56 2005CHROMAT_FILE: MSMg01no172_h10.g1 PHD_FILE: MSMg01no172_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATTTTCCTCTATACCTCATTATTTGATAGGATTGTTTCAGTTT
CTGGTAGTTAGCTTCTTGACCCCCTTTATATATTTTGGATATTAGCCCTC
TATCAAATGTGGGGTTAGTGAAGATTTTTTCCCAATCTGCAGGTTGCCAA
TTTGTCTTATTAACTATGTCCTTTGTCTTACAGAAGCTTTCCAGTTTCAT
GAGATCCCATTTATTAATTCTTGATCTTATAGCATGAGCCATTGGAGTTC
TATTTAAGAAATTTTCCTCTGTGCCAATGAGTTCAAGGTTCTTTCCCACT
TTCTCTTCTATTATTTTACCGCTTCTGGTTTTATGTTGAGGTCCTTGATC
CACTTGTATTTACTCCCCCCTGCAAGGAGACAAATATGGGTCTATTTTCA
TTTCTCCACATACTGATTGCTGTTTTGACCATCACCATTTATTGATGACG
CTTTCTTTTATCTGTTGTAAACTTTTGTCTCCTTTGTCAATTACTATTCG
CCCTTAATTGTGTGAATTTATTTCTGGTTCTTCCTATTCCTTATTCTTTG
TCTTATCGTCCCTTCCCCCTTTTCTCCACTCTTTTGCTATCTCTTATCCT
CTCTTTCCCTCTTTTTTTCTTAACCCTGTTCTGTTATTTGTTTTTCCGCC
ACTCCCCCCCACCCTTTTTTCTCCTTTCACCTCT
NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGATCTGCTTGTTTCTG
CTCAGTGCTGGGCCTATGCTTGTGCGGCATGCATTTTACCCACTGAATCA
CTCTGTAGCTTCCAATTTATGTGATCTTCGAATGAACCATAATACATATT
AAACAGCCTATGTATTATATAAAATAAGAAAAGGATACTTATATGGATGA
TTTAAATTTTGAGATGTTTTAAATTTTATAATTATAGGGAAAAAGATAAA
TAATATCTGGGAAGGACAAGTATATTATTGCAATAGGAAAAAGTGCATGT
CATGAAGCCCTAATATAAGTCTCTGCCACCATAAATGTTGGTGAACAAAT
AATTTCTAGGTTTGCCATCAGCCACAAAGTGCCAATCCCACTCTCATTTT
AAATGGCATGGTAAATGTTCCAGGGTGCCATTTCAAAGGATGTCTTCAAA
TCGAGAGCCTGCTTCTTTCGACCCTAATTCATAACCTCACAGGGGAGCAA
GCCAGAAGGAGATGTGGTGATGGTGAATGGAGATTGTGTGCTTGACATGA
CAACTTGATGGACGGCCCTACTCCATGTGCTGATAAAAGGAGTAATGCCA
GTTGAAGACCAGTATTCATACCTCTCGACTGCTTTATTGGGTACGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_h10.g1 MSMg01no172_h10.g1 CHROMAT_FILE:
MSMg01no172_h10.g1 PHD_FILE: MSMg01no172_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:56 2005
         (280 letters)



>mm_chr3_117350333_117351012
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagggatctgcttgtttctgctcagtgctgggcctatgcttgtgcggcatgcattttacc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 480 tagggatctgcttgtttctgctcagtgctgggcctatgcttgtgtggcatgcattttacc 421

                                                                       
Query: 61  cactgaatcactctgtagcttccaatttatgtgatcttcgaatgaaccataatacatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cactgaatcactctgtagcttccaatttatgtgatcttcgaatgaaccataatacatatt 361

                                                                       
Query: 121 aaacagcctatgtattatataaaataagaaaaggatacttatatggatgatttaaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaacagcctatgtattatataaaataagaaaaggatacttatatggatgatttaaatttt 301

                                                                       
Query: 181 gagatgttttaaattttataattatagggaaaaagataaataatatctgggaaggacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gagatgttttaaattttataattatagggaaaaagataaataatatctgggaaggacaag 241

                                                   
Query: 241 tatattattgcaataggaaaaagtgcatgtcatgaagccc 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tatattattgcaataggaaaaagtgcatgtcatgaagccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)