Query= MSMg01no172_h13.b1 MSMg01no172_h13.b1 CHROMAT_FILE:
MSMg01no172_h13.b1 PHD_FILE: MSMg01no172_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:57 2005
(310 letters)
>mm_chr3_23573327_23574036
Length = 710
Score = 460 bits (238), Expect = e-134
Identities = 289/306 (94%), Gaps = 2/306 (0%)
Strand = Plus / Plus
Query: 6 aattccatggatagttggctaggtttatgttacctggcatgagttcattcctattggtaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattccatggatagttggctaggtttatgttacctggcatgagttcattcctattggtaa 265
Query: 66 gccttgagtctacctt-gatagctagctgccagcaagacagaagttgcacctttgtaacc 124
|||||||||||| || ||| |||||| |||||||||||| |||||||||||||||||||
Sbjct: 266 gccttgagtctaa-ttcgattgctagccgccagcaagacaaaagttgcacctttgtaacc 324
Query: 125 ttggtaattctagatgttcagggtttaagaggattcacatgacttttcaacaccgtttcc 184
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 ttggtaattttagatgttcagggtttaataggattcacatgacttttcaacaccgtttcc 384
Query: 185 accaactcagtggcttctgctccagcaggatggctctggtctatgattcggattgatccc 244
||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 385 accaattcagtggcttctgctccaccaggatggctctggtctatgattcagattgatccc 444
Query: 245 ctttctcctaaatttattggaatttttttcttttttcttcagttccctgtgatatccaat 304
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 445 ctttctcctaaatttattggaatttttttccagtagctccagttccctgtgatatccaat 504
Query: 305 aaaggt 310
||||||
Sbjct: 505 aaaggt 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_h13.g1 MSMg01no172_h13.g1 CHROMAT_FILE:
MSMg01no172_h13.g1 PHD_FILE: MSMg01no172_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:57 2005
(282 letters)
>mm_chr3_23679034_23679715
Length = 682
Score = 476 bits (246), Expect = e-139
Identities = 273/282 (96%)
Strand = Plus / Minus
Query: 1 cattgtggcacttccatttactggaaaaatttcacatggtaaaccaaacgaacctctgtc 60
|||||| |||||||||||| ||||||||||||||||||| ||| |||| |||||||||||
Sbjct: 482 cattgtagcacttccatttcctggaaaaatttcacatggaaaaacaaaggaacctctgtc 423
Query: 61 actgtagagctgctgctttggatcttctggattatttgatgattgcattatgggtctgtg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 actgtagagctgctgctgtggatcttctggattatttgatgattgcattatgggtctgtg 363
Query: 121 tttataagaaatgccaagtgaagaaatgttgtgaaaactgcattttatcaggctgtcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tttataagaaatgccaagtgaagaaatgttgtgaaaactgcattttatcaggctgtcagg 303
Query: 181 ctgtgtatatgctgattaaatactagttaagagttccttcaacatgagcgatggtttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 302 ctgtgtatatgctgattaaatactagttaagagttccttcaacatgagcaatggtttaat 243
Query: 241 ctaggtttacctatactcagacggtgactgtggctctatgac 282
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 242 ctaggtggacctatactcagacggtgactgtggctctatgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
