BAC Information

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BAC

Clone NameMSMg01-172K08
Chromosome3 (Build37)
Map Location 56,538,917 - 56,553,814
singlet/doubletdoublet
Overlap genenone
Upstream geneMab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172K08.T7 (MSMg01no172_k08.b1)MSMg01-172K08.TJ (MSMg01no172_k08.g1)
ACCAG368492AG368493
length720720
length of high quality
(start - end)		318 (44 - 361)339 (378 - 716)
definitionCHROMAT_FILE: MSMg01no172_k08.b1 PHD_FILE: MSMg01no172_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:09 2005CHROMAT_FILE: MSMg01no172_k08.g1 PHD_FILE: MSMg01no172_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,553,500 - 56,553,814)(56,538,917 - 56,539,255)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGGCTAGTGAGATTGTGGGTCTGTAGATCACTTCTGGGTGTTAAGA
GCTGAGTACTACCCTCTGACATTTACATCATAGATCACTGTAAAAATCAA
CCTTACTACAACAGGAACTCATGGGAAAATAATTCAAGTTTGAATTGCTA
TCAAATATTTGAAATCAGATGGATTAGAAAATAAAATTCAGTCTGGGGTC
CTAGTTTGGTGGTACACAGGAGGCCTTGATTTAGATCCCTAGCACATCAA
AAGTAAATGAAAATAAAATAAAATGATTTTGTCATGTGAATGAAGTGTGT
AAGAGGCATGATTTTATAACACCACCCCCCAAATCAGAAACCTGATGTAT
GCATTTGCAATCTTCATGACCTTGAGCATTGACTTAATTATCTGAGTTAA
TCAAGTGGCATCTGTGTCCAAAATCGTCTAGCACATTTGGTTTCTTTGGA
TCATTCATCATTTAAAAACATGTAGGCTGAGATTTCCAGCAGGACAAAAC
ACTGAGACATCACCTTCCTAACTTCCCTTGAACAGAGAGAGGTTCTAGAC
ACAGTGGGGCAGTCTTCCTACACCGCACTCACTGGGTAGAGCTGACTCAG
GGCCTCCGTTGAACTTCTGATCCTCTTCCCTCCATTTCTCAAGGACTGGG
ATTGTAGGTATTTACCATTA

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCATGTAGATTCGAAAGCACCTGCC
AGCTATGTAGGGTTTCACAGCCATGCTAACAGAGCATATGACCAGCACTG
AGCTCTTGGTTTTGACATTTTCATCCAACATAATTCATACACCTCTTACA
AAAGTCCTCTCTGAAAGAATGTGAAGGTCATGTAGAAAGGCAAGGACATA
TTTACACATCACCACATTCTCTATTACAGGCTTCCTCTCCAACCATCCCT
CCCCCATTCATCTCCCTCATCCTCCCTCTGTTTTTTCCTTTTCTTTCTTG
TGAAAGCTGGAGTTTGTGCACACCAGCCATGTGCTCTACCAGTGAGGGAC
TCTATCTTCTTCCCTTTGTGTCCTTCCATGGTTACATGCCTTCAGAGGGC
AGAAAATAGACGTGGGAACCCAGTTAATGAAAGAAACAGAGATCCCAATT
TGCCACACTAGCTAGTTTAAAATTCTCCACTATAATTCAGAGAATGCCAC
TTGATAGCTCATCAGAGCTGGCTGCACTTCCTGCAGTGGACATCTGGATT
AAAGCTGAGTAGTCCACTCTGGATTAGTCTTGAGATACAGAGGTACTGTG
CCCAGAACAAGACTTGTCATATATACCTCTACACGTTCTTCATTTCTCAC
ATGGCAAACTAAATTACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_k08.b1 MSMg01no172_k08.b1 CHROMAT_FILE:
MSMg01no172_k08.b1 PHD_FILE: MSMg01no172_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:09 2005
         (318 letters)



>mm_chr3_56553297_56554014
          Length = 718

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaggctagtgagattgtgggtctgtagatcacttctgggtgttaagagctgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattctaggctagtgagattgtgggtctgtagatcacttctgggtgttaagagctgag 459

                                                                       
Query: 64  tactaccctctgacatttacatcatagatcactgtaaaaatcaaccttactacaacagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tactaccctctgacatttacatcatagatcactgtaaaaatcaaccttactacaacagga 399

                                                                       
Query: 124 actcatgggaaaataattcaagtttgaattgctatcaaatatttgaaatcagatggatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 actcatgggaaaataattcaagtttgaattgctatcaaatatttgaaatcagatggatta 339

                                                                       
Query: 184 gaaaataaaattcagtctggggtcctagtttggtggtacacaggaggccttgatttagat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaaaataaaattcagtctggggtcctagtttggtggtacacaggaggccttgatttagat 279

                                                                       
Query: 244 ccctagcacatcaaaagtaaatgaaaataaaataaaatgattttgtcatgtgaatgaagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccctagcacatcaaaagtaaatgaaaataaaataaaatgattttgtcatgtgaatgaagt 219

                          
Query: 304 gtgtaagaggcatga 318
           |||||||||||||||
Sbjct: 218 gtgtaagaggcatga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no172_k08.g1 MSMg01no172_k08.g1 CHROMAT_FILE:
MSMg01no172_k08.g1 PHD_FILE: MSMg01no172_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:09 2005
         (339 letters)



>mm_chr3_56538717_56539455
          Length = 739

 Score =  609 bits (315), Expect = e-179
 Identities = 333/339 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgctctaccagtgagggactctatcttcttccctttgtgtccttccatggttacat 60
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 catgtgctctaccagtgagcgactctatcttcttccctttatgtccttccatggttacat 260

                                                                       
Query: 61  gccttcagagggcagaaaatagacgtgggaacccagttaatgaaagaaacagagatccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttcagagggcagaaaatagacgtgggaacccagttaatgaaagaaacagagatccca 320

                                                                       
Query: 121 atttgccacactagctagtttaaaattctccactataattcagagaatgccacttgatag 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgccatactagctagtttaaaattctccactataattcagagaatgccacttgatag 380

                                                                       
Query: 181 ctcatcagagctggctgcacttcctgcagtggacatctggattaaagctgagtagtccac 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctcatcagagctggctgcacttcctgcagtgggcatctggattaaagctgagtagtccac 440

                                                                       
Query: 241 tctggattagtcttgagatacagaggtactgtgcccagaacaagacttgtcatatatacc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgcattagtcttgagatacagaggtactgtgcccagaacaagacttgtcatatatacc 500

                                                  
Query: 301 tctacacgttcttcatttctcacatggcaaactaaatta 339
           |||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tctacatgttcttcatttctcacatggcaaactaaatta 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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