BAC Information

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BAC

Clone NameMSMg01-172M06
Chromosome3 (Build37)
Map Location 72,319,422 - 72,319,735
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M06.T7 (MSMg01no172_m06.b1)MSMg01-172M06.TJ (MSMg01no172_m06.g1)
ACCAG368578AG368579
length757716
length of high quality
(start - end)
317 (45 - 361)235 (126 - 360)
definitionCHROMAT_FILE: MSMg01no172_m06.b1 PHD_FILE: MSMg01no172_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005CHROMAT_FILE: MSMg01no172_m06.g1 PHD_FILE: MSMg01no172_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTATACCAGGCTGGCCTCATACTCACAAATGCATTGGCTTT
TGCATCCCAAGTGCTGGGATTAAAGGCATATGCCATCACTGCCTGGTGTG
ATCTAACATTTTATAATTTAGTTTTTAAATTAACCATTGAAAATATACTA
ATATATGATGTTTTTTCAATTTGTCAATTTGTCTATTCTTCTTAATTGGT
TGGATGTAATGAACGTTTTTTTTATAAACATGTTTAATATTATTTCCTCA
AAAAAAAAGATGATTTTAATCTCTTAAGTGATTTTTCATTTTCTTTTTAA
CTCTTATTTNCTGNCTTTATGACTTGTCCCCGCGGTTGTGGTGGTTTTTN
AATTTNTTTTTTTCCCCCCCAAAAAAAAAAAAAATATCCGGTGCGGGTTT
TTTTTATTTTTTTCCCCCTTTCTCTCCCCCCCCTTTACTTTTCTCTTATT
CCCCCCTATCTCCTAACATTTCTTATCCTTTTTTACACCCCCTTCTTCAT
TTTTCCTCCTTTCCCCAATATATATTAATACCTCCTTTCCTCCCCCTTTT
CCTTTTTATCTTTTTCCTTAACCTTCTTTTTTTTTTCCCTCCTCCCCTTT
TCTTTTCTTTTTTTCCCCCTCACTTTTCCCATTTTTTTATTTTCCATATA
CTACCCTCCTATCTTTTATCTCAATATTTTTGCTTACAATTTCTCTTCCT
CTCTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACACAAATAATGGGTTTTTGGAC
TCTTCCTATATGTTAATGTAGGCCCCGCCTGTATCTAGGGAGTCCCTGAA
TATAGTTCCTCAGAGACCATTGAATGAAGCTTTGGAGATGAAGCCTGGAT
TGTGTTGGAAACATGATATTAGAGGTGTGAGAGCCATAGTATATCTGCTA
GGGGAAGCTGCATATGAAGAATGGAATGAGCCAAAAGAGAGAAGTATGAT
GAAGTGGGTAAAGCTGGAACAGTAGTCACTTTCAACAGTAGACAGAGAAC
TTCAGGGCTTTTTTTCTGCCCCCCCCCCCCCGATTCAGCTGTGTATTGGC
CCTGAATTTCTTTGCCACATCCTCACAATTCCATTTTGAGTGGTAATACA
TATTCTGTGCAGTTATATATTGAAAGTATGTAATCTATATTTTCATTTTA
CTGAGGGCTACAATTAATAAATTGCCTTGTTTCTCAGTAGAGATTTAATA
CTTTGAAGCATTGCTGAGATTATAAAGTTCTACTGGGAGATTTGAAATTA
GATTAAATGCATTTAAACATACAATGTTTTTGATTAAGATGTATAATGTG
GCAGCTTCTTCTGATTTACGCCTCATACCTCTCATCTATTTGCCTACTCT
GTTTCTCTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m06.b1 MSMg01no172_m06.b1 CHROMAT_FILE:
MSMg01no172_m06.b1 PHD_FILE: MSMg01no172_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:18 2005
         (317 letters)



>mm_chr3_72319219_72319937
          Length = 719

 Score =  542 bits (280), Expect = e-158
 Identities = 305/316 (96%), Gaps = 6/316 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtataccaggctggcctcatactcacaaatgcattggcttttgcatcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctcatactcacaaatgcactggcttctgcatcc 263

                                                                       
Query: 64  caagtgctgggattaaaggcatatgccatcactgcctggtgtgatctaacattttataat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagtgctgggattaaaggcatatgccatcactgcctggtgtgatctaacattttataat 323

                                                                       
Query: 124 ttagtttttaaattaaccattgaaaatatactaatatatgatgttttttcaatttgtcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttagtttttaaattaaccattgaaaatatactaatatatgatgttttttcaatttgtcaa 383

                                                                       
Query: 184 tttgtctattcttcttaattggttggatgtaatgaacgtttttttt----ataaacatgt 239
           ||||||||||| ||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 384 tttgtctattcctcttaattggttggatgtaatgaacgttttttttttttataaacatgt 443

                                                                       
Query: 240 ttaatattatttcctcaaaaaaaaagatgattttaatctcttaagtgatttttcattttc 299
           || ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 444 tttatattatttcctcaaaaaaa--gatgattttaatctcttaagtgatttttcattttc 501

                           
Query: 300 tttttaactcttattt 315
           ||||||||||||||||
Sbjct: 502 tttttaactcttattt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 719
Length adjustment: 9
Effective length of query: 308
Effective length of database: 710
Effective search space:   218680
Effective search space used:   218680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)