BAC Information

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BAC

Clone NameMSMg01-172N10
Chromosome3 (Build37)
Map Location 88,686,032 - 88,693,615
singlet/doubletdoublet
Overlap gene5830417I10Rik
Upstream genePrcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172N10.T7 (MSMg01no172_n10.b1)MSMg01-172N10.TJ (MSMg01no172_n10.g1)
ACCAG368626AG368627
length740721
length of high quality
(start - end)
189 (123 - 311)283 (74 - 356)
definitionCHROMAT_FILE: MSMg01no172_n10.b1 PHD_FILE: MSMg01no172_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:23 2005CHROMAT_FILE: MSMg01no172_n10.g1 PHD_FILE: MSMg01no172_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:23 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(88,686,032 - 88,686,214)(88,693,333 - 88,693,615)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAACCGCGGAATTCA
CTTTGTTGCCCAAAATAGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC
TCCTGTTTGCTGTTATTACCGGCGTGCGCCACCACAGCCAGCTAAACCCC
AATTTTTGAAGTGAAACTTTTTTACTATGAAAATGAAATTATTAATCGTA
GTGTACCATTATCATGGGGCTTTTTAGTGTGATTTAGTTTATCCTAATAG
CTATAGTTCATCAAAGGGAGCTATAAAAATCAGCCAGATTCCTGGTGTTG
TGACCGCGGAATTGATTTTTCTTCTTTTTCAAATATAATTATTAAACACA
TGTTGATTTTTGTCTCACCCTCCTACAAAGCCTGGTGTTGAAAAGTTAAC
AAAGATCTACCCCCCCCAAATTAACTGTTGTTAATCCAAGTATATATGTT
TATAATCTTACTTTTATCATCATGCATAAGTCTATACTATTCCCAATCAC
TTTGTATACTCGCTGTTTTCTTCCTCTAATCTGATTCGGCTATAAATTTG
AGTCTTTATCAACAAATTATGCCCTTGTGAACCTCTTTAAACGGTCGACT
ACATTACAACATGTACTCTACCTTTCACCCCCCTTTTATACCTTTTTCCC
CCCATGTTATCTCCTTATCCTCCCTTTGACCCCCATCACTTTTTTTTTTT
AACTACACCCACCCCGCTTTGTTTTTTCCCACTCCCCCCC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGCAAAGGTGCCCAGCTCTTTCTGG
GAAGAAAGGACACAAAGGAGCCCTCAGGTAACTCCAGACAGCTAACACCA
CACCACAGTCCTCAAGCTCTTAAGGGGGAAGGGACCTTCCTGCAACAAGA
TCAGGGGCAGGCGGCAATCTTTACTGATATCATTCCATTATAAAATCTGT
CTTTGGCCTCAGTCACTCAGGAACTAGATCTACAGTCATTTGTCTTTTTT
TTTTTTTTAAGTTATTTACTGACTTTTATTCTACACGCATTGGTGTTTTG
CCTGCATGTATGTCTGCGACGCCCCCACACTCCCTGACACTTGGAGTTAT
GACTGTTGTGAGCTGCTGCCAAATGCATCCTGGGAATTGAACCCAGGTCC
TTTGGAGAAGCAGCCCCAGGCCCTGCTGTTTAAGTCTAGGGCTGTAACAC
TCCTCAGCCGTCCAGTGCATGTTCTGCTCGCCAGGTACATTGACGATTCG
GCAGCTAAGCCATCACAATGTATGCTAAAAGCCCTAGATTTAAGCTCAGC
ATTGTGGCGAGGAAGAATGCCAGGATATTAGGTTCCCCCACACAGACCCA
GCTTTTCCAGACAGTCTCGCTCTCTAGGCTTGAACAGACTACTTCAGGCT
TCCTCCGTTCTCATTCACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_n10.b1 MSMg01no172_n10.b1 CHROMAT_FILE:
MSMg01no172_n10.b1 PHD_FILE: MSMg01no172_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:23 2005
         (189 letters)



>mm_chr3_88685832_88686420
          Length = 589

 Score =  315 bits (163), Expect = 9e-91
 Identities = 178/183 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgcgccaccacagccagctaaaccccaatttttgaagtgaaacttttttactatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtgcgccaccacagccagctaaaccccaatttttgaagtgaaacttttttactatgaaa 260

                                                                       
Query: 61  atgaaattattaatcgtagtgtaccattatcatggggctttttagtgtgatttagtttat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 atgaaattattaatcgtagtgtaccattatcatggggctttttagtgtgacttagtttat 320

                                                                       
Query: 121 cctaatagctatagttcatcaaagggagctataaaaatcagccagattcctggtgttgtg 180
           ||||||||||| |||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct: 321 cctaatagctaaagttcaacaaagggagctagaaaaatcagccagatttctggtgttgtg 380

              
Query: 181 acc 183
           |||
Sbjct: 381 acc 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no172_n10.g1 MSMg01no172_n10.g1 CHROMAT_FILE:
MSMg01no172_n10.g1 PHD_FILE: MSMg01no172_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:23 2005
         (283 letters)



>mm_chr3_88693133_88693815
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcaaaggtgcccagctctttctgggaagaaaggacacaaaggagccctcaggtaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 483 tcagcaaaggtgcccagctctttctgggaagaaaggacacaaaggagttctcaggtaact 424

                                                                       
Query: 61  ccagacagctaacaccacaccacagtcctcaagctcttaagggggaagggaccttcctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccagacagctaacaccacaccacagtcctcaagctcttaagggggaagggaccttcctgc 364

                                                                       
Query: 121 aacaagatcaggggcaggcggcaatctttactgatatcattccattataaaatctgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aacaagatcaggggcaggcggcaatctttactgatatcattccattataaaatctgtctt 304

                                                                       
Query: 181 tggcctcagtcactcaggaactagatctacagtcatttgtcttttttttttttttaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 303 tggcctcagtcactcaggaactagatctacagtcatttgtcttttttttttttttaaatt 244

                                                      
Query: 241 atttactgacttttattctacacgcattggtgttttgcctgca 283
           ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 243 atttactgacttttattctacacacattggtgttttgcctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)