BAC Information

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BAC

Clone NameMSMg01-172P09
Chromosome3 (Build37)
Map Location 100,230,252 - 100,230,536
singlet/doubletsinglet
Overlap genenone
Upstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2, LOC195514
Downstream gene4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172P09.T7 (MSMg01no172_p09.b1)MSMg01-172P09.TJ (MSMg01no172_p09.g1)
ACCAG368712AG368713
length833724
length of high quality
(start - end)
100 (46 - 145)288 (71 - 358)
definitionCHROMAT_FILE: MSMg01no172_p09.b1 PHD_FILE: MSMg01no172_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:32 2005CHROMAT_FILE: MSMg01no172_p09.g1 PHD_FILE: MSMg01no172_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGGAAT
TCAAAAGGCTCAACAAGCTGAAGTGCCCAAGTGAGGACTCCACAGTCCCA
CTTGGGAAAGAGAAGAAAGCAATAGTTGGGAGGGAGGGAGGGATTTTCTN
NNNNNNTTCNNTTTTTCTTCTTTTTCAATTTTCCTCCCCCCCCCCCCCTC
TTCTTCCCTTCACCTTTTTTCTTTCTCTCCCTCCCCCCTCCCCTCTTTCT
CCCTTTCTTTTACCCTTCCCCCTCCCCTTTTCTCTCTCTCTCCCCCTTTC
CCCCCTTTCTAACCCCCCCCTTTCTTTTTTTTCCATTTTTTTAAATTTCG
AGTAAGAAAAATTTTTGGGTAACCCTAAAACAAAAACCTCTTTTTTTTTT
TTTTTTTTTTTTTGGGGGTGTNGGCCCCCCCCCCCAAAAATATCAAAACA
CCTCCTCTCCCGTGTGCCCCTCTTTTTTCCTTCCCTCCTCCCTCTCCCCC
CTCTCCCCCCCTCTTTCTCCCCTCCTCCCTTTTTTTCCTTTTCCCCCTCC
TTCCCCCACTTCTCCTTTTTCCCTCTCTCCCTCTTTCCTCCCTCTTCCCC
TCTATTCTTTCTTCACCCCCCCCCGCTCTTCTTTTCCTCCTCCTCCATCT
TATCCCCCTCTCCCTTTCTCCCCTTTATTTTCTCCTCTCATCCTCTCATT
CCTCCCCTTTCCCCCTTTTCCGCCCCTCCGTTTTTCTTCCCTTCTCCTTC
CCCTCCCCTTCCCTTCTCTCCTCCCCTCCTCCTCCCTTTTTTTTTCTTCC
CCCTCCTTTTTCCCTATCCCACCCCCCCTTTCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTGTGAGCCTTCTTTACACGTCCACTTTT
CAAATGTGTGAGAGGAGCTCTCTGTCCTCCGTTCCTTCAACTCCAAGGAT
GCGTGTCTTAATAACCTAGGGACCCTGGAGCGCACACTAAGTAAGGTCTT
TGGAAAACAGTATCATCTCTTTAGAAAAGTGTAGTCACAAAAGTCTGTGT
ACAGTCTGCTCGCGACCCCTCCCCATTGTGACACCATCACAATTCTCCAG
TAGTCAGTTGGCCATACTGAATATCCACGTGCCGGAACCATGATGGGGGT
CGCTGTTTTATTTTCTAAACACCTGCCGTCCCCACATCAATTAGTGTGTG
TAAACTGGCTGCCCCGGCTTGCCAGACAAGGCACATACAGGTTTAGTAGG
GTCTGAATGGCACTAAGGGTCAGGTGGCAATTGAGGTGAGCAAGGGCAGC
TCGAGCCTGCTTCTGATGATCTTCTCCAAGCAGCGCCATCAATTATGCGT
CGAGCCTGGACTCTGTTCTAGTCCAGGAGTTTCCCTACGAAGTAGAATGT
CTGGATTTGAGCAGACCAAATGGCTTAAGCAGCTGGTTTCTCTTCTTGGG
AGGCAGTCCTGCCATCCGCTTCCCACTTCTCCTTCATGTTTGAGGTACCC
CCCCCTCTGAGCCTCAATATAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_p09.g1 MSMg01no172_p09.g1 CHROMAT_FILE:
MSMg01no172_p09.g1 PHD_FILE: MSMg01no172_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:32 2005
         (288 letters)



>mm_chr3_100230052_100230739
          Length = 688

 Score =  489 bits (253), Expect = e-143
 Identities = 277/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtgagccttctttacacgtccacttttcaaatgtgtgagaggagctctctgtcctcc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 485 agtgtgagccttctttacacgtccagttttcaaatgtgtgagaggaggtctctgtcctcc 426

                                                                       
Query: 61  gttccttcaactccaaggatgcgtgtcttaataacctagggaccctggagcgcacactaa 120
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gttccttcaactccagggatgtgtgtcttaataacctagggaccctggagcgcacactaa 366

                                                                       
Query: 121 gtaaggtctttggaaaacagtatcatctctttagaaaagtgtagtcacaaaagtctgtgt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 365 gtaaggtctttggaaaacagtatcatctctttagaaaagtgtagccacaaaagtctgtgt 306

                                                                       
Query: 181 acagtctgctcgcgacccctccccattgtgacaccatcacaattctccagtagtcagttg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acagtctgctggcgacccctccccattgtgacaccatcacaattctccagtagtcagttg 246

                                                        
Query: 241 gccatactgaatatccacgtgccggaaccatgatgggggtcgctg 285
           ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 245 gccatacggaatacccacgtgccggaaccatgatgggggtcgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)