BAC Information

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BAC

Clone NameMSMg01-173A01
Chromosome3 (Build37)
Map Location 132,793,691 - 132,794,030
singlet/doubletsinglet
Overlap genenone
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12
Downstream gene9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173A01.T7 (MSMg01no173_a01.b1)MSMg01-173A01.TJ (MSMg01no173_a01.g1)
ACCAG368741AG368742
length710684
length of high quality
(start - end)
310 (38 - 347)531 (108 - 638)
definitionCHROMAT_FILE: MSMg01no173_a01.b1 PHD_FILE: MSMg01no173_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:35 2005CHROMAT_FILE: MSMg01no173_a01.g1 PHD_FILE: MSMg01no173_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:35 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GTCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAAC
ATCAAAGTAAATGCAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGAC
TAGACAAGGCTGCCCACTTTCTCCTTACCTTTTCACCATAGTACTTGAAG
TATTAGCCAGAGCAATTCGACAACAAAAAGAGATCAAGGGGATACAAATT
GGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATA
TATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATATACT
TTTTTCGGCCGCCCCCCCGCATATAAAATAAACTCAAACAAGTCAATGGC
CTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA
CACCCTTCTCAATAGTCACAAATGATATAAAATATCTTGGCGTGACTCTA
ACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAA
AGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGA
TTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC
AGATTCAATGCAATCTCCATCAAAATTCCCACTCAATTCTTCAATGAATT
GGAATGAGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCTAGCACCTAAATAAGACTTAAATAATGCTATTTATAAAGGGT
AGCCCGCCAAACTCTGTAAAGATTCCCTTTATAACCTGTGACCCCTCAAT
ATATTTATTCATTTTTCTTACAAATGTATTTATAAAAGTATAGAAAAGGA
GATGAAGAATACTCCTGGTTTTACACTTTTAAACACAAAATATTTTCAGT
ATCTTTGCCTGGGTTAGTAATTATGTATATGACTTATTCTATAAAATGGG
TGTGACAGTATATGTTCATAGTTATATCACTTAGGAGGCTGTATCATGAG
ATTTTGCCTCGGCAAAACTATAAAAATTTAAAGATATATTTCAGAGAATT
ATTTTAAGGAATAAATTAGCTATATAAATAGAGTGGTGTTTAAGTGTTAA
AAAGGTAATGTCTATAATATGTTTTTTGTGTATATATATTTATATATGCA
TAACATATATCTGAAAGACATGATGTCTTTGAGGAATAACACTAAAGGGG
AAAATAATAAAGAACTTAAATTTAGTTTATGCATATCATTCCATTTCTAC
CTTCTGAAAATAAAAAATGTATTACCCCAACGGAAAAGAAATTTAGGCTA
ATGAAAATTACTGTGTTAAAAAGGTGGAAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_a01.g1 MSMg01no173_a01.g1 CHROMAT_FILE:
MSMg01no173_a01.g1 PHD_FILE: MSMg01no173_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:35 2005
         (531 letters)



>mm_chr3_132793299_132794230
          Length = 932

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%), Gaps = 1/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 193 gtgtgacagtatatgttcatagttatatcacttaggaggctgtatcatgagattttgcct 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtgtgacagtatatgttcatagttatatcacttaggaggctgtatcatgagattttgcct 452

                                                                       
Query: 253 cggcaaaactataaaaatttaaagatatatttcagagaattattttaaggaataaattag 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cggcaaaactataaaaatttaaagatatatttcagagaattattttaaggaataaattag 512

                                                                       
Query: 313 ctatataaatagagtggtgtttaagtgttaaaaaggtaatgtctataatatgttttttgt 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctatataaatagagtggtgtttaagtgttaaaaaggtaatgtctataatatgttttttgt 572

                                                                       
Query: 373 gtatatatatttatatatgcataacatatatctgaaagacatgatgtctttgaggaataa 432
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 573 gtatatatatttatatgtgcataaaatatatctgaaagacatgatgtctttgaggaataa 632

                                                                       
Query: 433 cactaaaggggaaaataataaagaacttaaatttagtttatgcatatcattccatttcta 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cactaaaggggaaaataataaagaacttaaatttagtttatgcatatcattccatttcta 692

                                                   
Query: 493 ccttctgaaaataaaaaa-tgtattaccccaacggaaaag 531
           |||||||||||||||||| |||||||||||||||||||||
Sbjct: 693 ccttctgaaaataaaaaaatgtattaccccaacggaaaag 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space:   480362
Effective search space used:   480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)