BAC Information

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BAC

Clone NameMSMg01-173F06
Chromosome3 (Build37)
Map Location 43,313,612 - 43,313,932
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173F06.T7 (MSMg01no173_f06.b1)MSMg01-173F06.TJ (MSMg01no173_f06.g1)
ACCAG368964AG368965
length729730
length of high quality
(start - end)
325 (46 - 370)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no173_f06.b1 PHD_FILE: MSMg01no173_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:59 2005CHROMAT_FILE: MSMg01no173_f06.g1 PHD_FILE: MSMg01no173_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATCTACAGAAATGTAATATGAGAAATAAGAATTTTAATATATT
AGCTAAAAATTGTAAAAATTGTAGAGATTATCCAATAATATGGACATAAA
TAAGATTTTTTACAGACAAAGAAACCACAAAGAGGAAATTACAATCTAGG
GCCGAGCAAATACTTTGATAAATTGTCAATATAAATTATTACATTTTTAT
TGAAGCCATCCATAATATTTTTGTCTCATTATTATTTTATGTTCAGTCAG
TGTAGAAAATATGATATAATGCATTGTGATTGCCACAGTTTCTTATCAGA
GTGAGAGTTCTGGAAGTTCACCAACAGAGACTGGCCACTGACTATGCTTC
ATGTTTTTCCACCTCACATGACAACGACAGTTTTATTTTTCAAGGCATTC
ATATGCCTGAAGAGAGTCAGTGTTCCTCATTGGCCATTATGGGAAGGTAA
AACAATACAGCATTCTAACTATATTCAACCTGCATATAACTCAATATACT
AATCTCCTTGTTCTCAGTCATTCCTTTTTATGGGCACAACCGTAACTGTG
TTTGTATGATACTAACACACATGAGGTACCCACAGCAATGATGCCAAGAC
ATTGCACAGGGTTCTCTTTCTGTTTTTGACCAGTTGTCACTGATCAAAGG
AAGTACTTCTTTTAATTTCCACAATGAAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCT
GAGAAGCACCTGAAAAAATGTTAAGCATCCTTAATCATCAGGGAAATTCA
AATCAAAACAACCATAAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAGTTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
TCACTCTTCCATTGTTGGTGTTATATGTTTTAACATATATATTACTTCAG
GTTTTTCTATGATATTGATTCTATGTTCAGTAGAAGGACATGTTTCAAGG
GAATATGGTGTATATTAATAACCGCCGACCCCACCATGTTACTCTGACCT
CTTCATACATGTTTATACAATTGCACATCACACGTGGAAACAAGCATACA
ATACATGTGTACAAGTGCATTCACATGCACACACAAATGAAAATTAAAAA
AAAAACAGAAATTTTAGTCACACAATTTTTGAAGATTATGGTCAAAGATT
TCATTTCAAGGAAATATGGATTCTGGGGATATCTCTGTTATTTAGCAGAA
TAAAGGCTGTTTTTCTCTGTCCTCACTTGGTCTATTACATATACAAGCAG
AAAGAATAGAAGTTCACTGCCAACCCTTCTCTCTCCTCATAGGAGTTACT
ATTTCACTATATTAAATAGCAAATACAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_f06.b1 MSMg01no173_f06.b1 CHROMAT_FILE:
MSMg01no173_f06.b1 PHD_FILE: MSMg01no173_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:59 2005
         (325 letters)



>mm_chr3_43313408_43314132
          Length = 725

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatctacagaaatgtaatatgagaaataagaattttaatatattagctaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcatatctacagaaatgtaatatgagaaataagaattttaatatattagctaaaaa 466

                                                                       
Query: 65  ttgtaaaaattgtagagattatccaataatatggacataaataagattttttacagacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttgtaaaaattgtagagattatccaataatatggacataaataagattttttacagacaa 406

                                                                       
Query: 125 agaaaccacaaagaggaaattacaatctagggccgagcaaatactttgataaattgtcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agaaaccacaaagaggaaattacaatctagggccgagcaaatactttgataaattgtcaa 346

                                                                       
Query: 185 tataaattattacatttttattgaagccatccataatatttttgtctcattattatttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tataaattattacatttttattgaagccatccataatatttttgtctcattattatttta 286

                                                                       
Query: 245 tgttcagtcagtgtagaaaatatgatataatgcattgtgattgccacagtttcttatcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgttcagtcagtgtagaaaatatgatataatgcattgtgattgccacagtttcttatcag 226

                                
Query: 305 agtgagagttctggaagttca 325
           |||||||||||||||||||||
Sbjct: 225 agtgagagttctggaagttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)