Query= MSMg01no173_f07.b1 MSMg01no173_f07.b1 CHROMAT_FILE:
MSMg01no173_f07.b1 PHD_FILE: MSMg01no173_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:59 2005
(316 letters)
>mm_chr3_124679578_124680294
Length = 717
Score = 538 bits (278), Expect = e-157
Identities = 305/314 (97%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcttgc-aatatatttatataggtggaaaatggtttgtaagctattctattcc 62
||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 517 ggaattctcttgcaaatatatttatataggtggcaaatggtttgtaagatattctattcc 458
Query: 63 attttaaaactatgacaattgccaattctaggtaaggtgtttgacatggtttaacaccat 122
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 457 attttaaaactatgacaattgccaattctaggtaaggtgcttgacatggttaaacaccat 398
Query: 123 aaaaattctcatattttgggcaaaatatttggttctgtgtaaaatcccaaaagctgctgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaaattctcatattttgggcaaaatatttggttctgtgtaaaatcccaaaagctgctgt 338
Query: 183 atcataagcttacttttgattctgtccaagaagttgttactgtgcagaatattaaacaga 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 337 atcataagcttacttttgattctgtccaagaagttgttattgtgcagaatattaaacaga 278
Query: 243 aaggatttgagttttactttgaacacaggaggatttgagtaaaatattttttgaagttag 302
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 277 aaggatttgagttttactttgaacacaggaggatttgagtaaaatgttttttgaagttag 218
Query: 303 tatcatatagtgtt 316
|| | |||||||||
Sbjct: 217 taacctatagtgtt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space: 217356
Effective search space used: 217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_f07.g1 MSMg01no173_f07.g1 CHROMAT_FILE:
MSMg01no173_f07.g1 PHD_FILE: MSMg01no173_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:59 2005
(652 letters)
>mm_chr3_124568780_124569831
Length = 1052
Score = 862 bits (446), Expect = 0.0
Identities = 593/656 (90%), Gaps = 31/656 (4%)
Strand = Plus / Plus
Query: 1 tctgccctgccttccaggtctcttggtaacttgagcctttctgacccgagttgggtcagg 60
|||||||||||||||| |||| ||||||||| ||||| | |||| |||||||
Sbjct: 224 tctgccctgccttcca--------ggtagcttgagcctctctgaactgagtcaggtcagg 275
Query: 61 ctgggccagcaaaaggccaaaaggcaacaatccagtgaagagtgctgcagtgggat--at 118
|||| ||||||||||||| |||||||| || || ||| || || ||
Sbjct: 276 ctggaccagcaaaaggccgaaaggcaa-aa---agcgaa--------ca-----atccat 318
Query: 119 tgggtggctcttcgggagagaagatctcttcctaagtgttaa-tagtacagttcttggaa 177
||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct: 319 cgggtggctctttgggagagaagatctcttcctaagtgttaact-gtacagctcttggaa 377
Query: 178 caaaaggctcagacaaaggaatagtgctcgcatacctttaattccctgcatggctttata 237
||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct: 378 caaaaggctcagacaaaggaatagtgctctcacacctgtaattccctgcatggctttata 437
Query: 238 tacagttct-ggggtgattcggggtttgacagcagggacctctcattggcttagactgac 296
||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 438 tacagttctgggggtgattcagggtttgacagcagggacctctcattggcttggactgag 497
Query: 297 agtttgggggaaacctgatttgcatgtgggaaggcttggtgttattcctaagtggctgat 356
| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatttggggaaaaccttatttgcatgtgggaaggcttggtgttattcctaagtggctgat 557
Query: 357 agccacgcctctcctgtatggattgtgggggcggtaactccaacaggagccagggtccag 416
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 agccacgcctctcctgtatggattttgggggcggtaactccaacaggagccagggtccag 617
Query: 417 gagacatgagagaactccttccgtcccatgtaagtgaattatcactactgggtgctgggg 476
||||||||| |||||||||||| |||||||||| ||||||||||||||||| | || |||
Sbjct: 618 gagacatgacagaactccttccttcccatgtaaatgaattatcactactgg-tccttggg 676
Query: 477 ttcatgatctaggtgcaatttcaataacacatagactagattgtaatgaatgaagtagtc 536
|||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 677 ttcaagatctaggtgcaatttcaataacacatagagtagattgtaatgaataaagtagtc 736
Query: 537 aattatccaattgcgttcttttttaaaatgtaaatgttttttttcattcaatagatcttg 596
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 737 aattatccaattgcgttctttttttaaatgtaaatgttttttttcactcaatagatcttg 796
Query: 597 atcctattatttttccttccccacctcctcctagctccccaccctgcctccttacc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atcctattatttttccttccccacctcctcctagctccccaccctgcctccttacc 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
