BAC Information

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BAC

Clone NameMSMg01-173F17
Chromosome3 (Build37)
Map Location 88,685,953 - 88,797,344
singlet/doubletdoublet
Overlap gene5830417I10Rik, Msto1, Dap3, Ash1l
Upstream genePrcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173F17.T7 (MSMg01no173_f17.b1)MSMg01-173F17.TJ (MSMg01no173_f17.g1)
ACCAG368986AG368987
length709804
length of high quality
(start - end)
317 (45 - 361)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no173_f17.b1 PHD_FILE: MSMg01no173_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:01 2005CHROMAT_FILE: MSMg01no173_f17.g1 PHD_FILE: MSMg01no173_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:01 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(88,685,953 - 88,686,264)(88,797,106 - 88,797,344)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC
TGCCTCCTGTTTGCTGGGATTAAAGGCGTGCGCCACCACAGCCAGCTAAA
CCCCAATTTTTGAAGTGAAACTTTTTTACTATGAAAATGAAATTATTAAT
CGTAGTGTACCATTATCATGGGGATTTTTAGTGTGACTTAGTTTATCCTA
ATAGCTAAAGTTCAACAAAGGGAGCTAGAAAAATCAGCCAGATTTCTGGT
GTTGTGACCCTGGAATTGATAAATCTTCTTTTTCAAATATAATTATTAAA
CACATGTTGTTATTTGTCCAAATCTTTACCACGCCTGGTGTTGAAAAGTT
AACAAAGATCTAAGTAGTTAAAATAACAGAAAGTTAATCTAAGTATATAT
GTTTATAATCTTATTTTTATCATCATGCAAAAGTCAATACTAATCCAAAA
TATTTTGTAGACTTGTTGTTTTCTTCCTCTAAAAAGAATCGGCAATAAAC
TGAGGGCTCAGCAGGACTTATGCCCTGTGGTCATCTTAAGATGGTGACAA
CATAGTACATGTACCTTCCTTTACCCTTATTGAATACGGAAGTCAGCCAT
GCAGCTTCTTACATTTTGATGACGTCATCATGCATGATGCCAAACAGTCC
TGTGCTTGG
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAAACCTCCCAGAACCATCA
CAATCTATTTTAAACCCTTACCCCTGCATGCTTATACTTTACTTATGGGT
GTATCTCCAATAAAACTCTAGAGAAAGTGTCAAAACCAGGATATTTTCAT
CAACTGATGTTTATCCCCTTCAGGTAAAAAAAGGAAACAAAACTAAGTAT
GCTTTAAAATAAGAGAGAGAGGGAGAAAGGGACAGAGGGAGGGGGAGGAA
GAAGGGAGAGGGAGATTTTTTTTTTTCACACCAATGTGTCCCCCCACTTT
TTCTCCATTTTTTTTTTTCCCCCCCCCCCCCCCCCCCATAATGGATTTTA
TTCCCCATTTGTTATTTTCCTCGCCCCCCTATAAAAATAAGTTAATCCCG
CGTGCCGCGGCGACCCATATTTGCTCTATCTTTTACACTTTTTTCCTTTA
TTCTTTTTTTTCTCCCCTATTTTCACTCTGTCCTTCTCATCCCCTTTATT
TACACCTTTTATCACTTCATTTACACCTCATTCTTTTTTATCCCCATCCA
TTATTACTTATATGGTTACTCCAACTACCTTATTCCCATCACCTATCTTT
CCTCCCTCCAATCTTTTATACCATTCCCATAACAGTACTCATTACATATT
ATTTCACCCATTATATCTCACACGCATTGTGCTATGTTTTCCCTATTTAT
CTCCTTAATTTTTTTTTTTTAATATTTCTTTTTCCACCCACTTTTCTCCT
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_f17.b1 MSMg01no173_f17.b1 CHROMAT_FILE:
MSMg01no173_f17.b1 PHD_FILE: MSMg01no173_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:01 2005
         (317 letters)



>mm_chr3_88685750_88686466
          Length = 717

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcc 263

                                                                       
Query: 64  tgtttgctgggattaaaggcgtgcgccaccacagccagctaaaccccaatttttgaagtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtttgctgggattaaaggcgtgcgccaccacagccagctaaaccccaatttttgaagtg 323

                                                                       
Query: 124 aaacttttttactatgaaaatgaaattattaatcgtagtgtaccattatcatggggattt 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 aaacttttttactatgaaaatgaaattattaatcgtagtgtaccattatcatggggcttt 383

                                                                       
Query: 184 ttagtgtgacttagtttatcctaatagctaaagttcaacaaagggagctagaaaaatcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttagtgtgacttagtttatcctaatagctaaagttcaacaaagggagctagaaaaatcag 443

                                                                       
Query: 244 ccagatttctggtgttgtgaccctggaattgataaatcttctttttcaaatataattatt 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 ccagatttctggtgttgtgaccctggaattcataaatcttctttttcaaatataattatt 503

                       
Query: 304 aaacacatgttg 315
           ||||||||||||
Sbjct: 504 aaacacatgttg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no173_f17.g1 MSMg01no173_f17.g1 CHROMAT_FILE:
MSMg01no173_f17.g1 PHD_FILE: MSMg01no173_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:01 2005
         (243 letters)



>mm_chr3_88796959_88797601
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggaaacctcccagaaccatcacaatctattttaaacccttacccctgcatgcttata 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 386 tctggaaacctcccagaaccatcacaatctattttaaacccttacctctgcatgcttata 327

                                                                       
Query: 61  ctttacttatgggtgtatctccaataaaactctagagaaagtgtcaaaaccaggatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctttacttatgggtgtatctccaataaaactctagagaaagtgtcaaaaccaggatattt 267

                                                                       
Query: 121 tcatcaactgatgtttatccccttcaggtaaaaaaaggaaacaaaactaagtatgcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcatcaactgatgtttatccccttcaggtaaaaaaaggaaacaaaactaagtatgcttta 207

                                                                      
Query: 181 aaataagagagagagggagaaagggacagagggagggggaggaagaagggagagggaga 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aaataagagagagagggagaaagggacagagggagggggaggaagaagggagagggaga 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)