BAC Information

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BAC

Clone NameMSMg01-173H04
Chromosome3 (Build37)
Map Location 18,389,737 - 18,390,019
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173H04.T7 (MSMg01no173_h04.b1)MSMg01-173H04.TJ (MSMg01no173_h04.g1)
ACCAG369052AG369053
length730718
length of high quality
(start - end)
274 (46 - 319)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no173_h04.b1 PHD_FILE: MSMg01no173_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:08 2005CHROMAT_FILE: MSMg01no173_h04.g1 PHD_FILE: MSMg01no173_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACCAGTGGAAACAAAAAGAACTATTCAAAGAATCAAACAAACCA
GGAGCTGGTTCTTTGAGAAAATCCCCAAGATAGATAAACACTTAGCCAGA
ATATCTAGAAGGCATAGGGACAGTATTCTAATTAAGAAAATCAGAAATGA
AAAAGGAGACATAACAACAGATCCTGAGGAAATCCAAAACATCATCAGAT
CCTACTACAAAAGGCTATACTAAACAAAACTGGAAAACTTGGATGAAATG
GAGAACTTCCTAGACAGATATTTTTTAACAAAGTTAAATCAGTATAAGAT
TAACAATCTAAACTGCTTCCTTGCCGTAAACAACCAGAAGCAGTCATCAA
TAGTATCCCAACCAAACNAAAAAAAAAAAAAAAAAAATTGTGGGGGGGGG
GCGGGACCAGATGGGTTTAGGGCAAAGTTCTATTGGACCTTCAAAGAAGA
CCTAATTCCAACTCTCCTGAAATTGTTTCACAAAATAGAAACGGAAGGCA
CTCTACCCAATTTATTTTATGAAGCCACAATTACTCGGATACCTAAACAA
CCCAAAGATCCAACATAGAAAGAGAACTTCCGAACAATTTCCCTTATGAA
TATCGATGCAAAAATATTTAAGAAAACCGCTTCAAACTTAATCCAAACAC
ACATCAAACAATCCCCCCTCTTGACCAGGG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTATTGCGGTCAGGGGATTAAAT
AAGAGATTTAAAATGCTCTCAGAGAAAAGGGCATTTTAAGAGATAGGAGA
TAGTGTGGAGGGGCTGAAAATCTATTACAGGCCAAAGGAAAGAAAATGTA
AAATGTCAGGAAGGCTGACATAGTATTTGGAGACAAACGCTTGCCTTGGT
TAATTCTGCAGCAGAGTTGGTGTACTACTGGGCATGTGACTACAGAGGAT
GTAGGCCTACTAAGTGTGCTAGTCAATAATCTTAGAGAGTCAGGAGGCCA
AGGCAGGAGTTTTTTTTTTTCCGGCTGACTCCCGGGAACCTAACCAGACC
TTTACACAAAATACATTAGAAAAAAGACTTACATGCAACTTAGCAGTGCG
AGCTTGCCTGCTAGGTACAGTGTCCTAGGATCAATTGCCAGCTGCCCACA
CAGAGGTAGAATGAAAAACAAAGAAGTATACCAAGGCCTCAAATGCTCAG
ACTATGGATTTTAATGCCAATTTTTTTTATTTAAGTACTAAATAGTAGTA
TGACTTTCACCCTGAATTGTTACTTTGTCCTCAGATAAGAACCTCACAGA
TTATTCAATAAATAGCATTCTGAATCATCCTGCTATTACTTCTGCTACCA
TCTGCAAGCCATGCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_h04.g1 MSMg01no173_h04.g1 CHROMAT_FILE:
MSMg01no173_h04.g1 PHD_FILE: MSMg01no173_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:08 2005
         (286 letters)



>mm_chr3_18389537_18390222
          Length = 686

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtattgcggtcaggggattaaataagagatttaaaatgctctcagagaaaagggcattt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 483 agtattgcggtcaggggattaaataagagatttaaaatgccctcagagaaaagggcattt 424

                                                                       
Query: 61  taagagataggagatagtgtggaggggctgaaaatctattacaggccaaaggaaagaaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 423 taagagataggagatagtgtggaggggctgaaaatctattacaggccagaggaaagaaaa 364

                                                                       
Query: 121 tgtaaaatgtcaggaaggctgacatagtatttggagacaaacgcttgccttggttaattc 180
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 363 tgtaaaatgtcaggaaggctggcatagtatttggagacaaacacttgccttggttaattc 304

                                                                       
Query: 181 tgcagcagagttggtgtactactgggcatgtgactacagaggatgtaggcctactaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgcagcagagttggtgtactactgggcatgtgactacagaggatgtaggcctactaagtg 244

                                                      
Query: 241 tgctagtcaataatcttagagagtcaggaggccaaggcaggag 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgctagtcaataatcttagagagtcaggaggccaaggcaggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)