BAC Information

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BAC

Clone NameMSMg01-173H16
Chromosome3 (Build37)
Map Location 62,967,674 - 62,967,963
singlet/doubletsinglet
Overlap genenone
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984
Downstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173H16.T7 (MSMg01no173_h16.b1)MSMg01-173H16.TJ (MSMg01no173_h16.g1)
ACCAG369076AG369077
length735732
length of high quality
(start - end)
313 (45 - 357)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no173_h16.b1 PHD_FILE: MSMg01no173_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:10 2005CHROMAT_FILE: MSMg01no173_h16.g1 PHD_FILE: MSMg01no173_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCGGT
TCATTCTGAGGTTGTTCTAGGAGGCCCTTATCTCAAAAATGTTCTTGGAT
ATCTTTTACTCTTCAACTCTTCTGAATAATACCTTGGTCAAGGAAAGAAT
AAAGAAAGAAATTAAAAACTTTTTAGAGTTTAATGAAAATGAATCCCAAG
AGTACCCAAACTTATGGGACACAATGAAAGCATTTCTAAGAGGAAACCTC
AAAGCTCTGAGTGCCCACCCTAAAGAAACTAGAGAGAGCAAACACTAACA
ACTTGACTTCATATTTACCCCNTCTACCACCAAAAGGAAGCAAATTCACC
CAAGAGGAGTAGACAGCAGGAAATAAAAAAAATCAGGGGCCAAATCCACC
AAAGTGGAAACAAGAAAAACTTATTCTAGAATCACCCAAAGGAGGACTTG
TTTCTTTGAAAAATTTATTAAAAAAATTAAACCCTTAACCCAATTTCCTA
AAAGGCCCACTGGGTCGCGAATTTATATTAACAAAACCCCCCCTTTAAAA
AACCTCCTCCCGGGGAACCCCCACCATATATCCCCCCCCCTCCCCCCTAT
ATCCCCTAAAAAAACCCCCTCCTCCAAAGAACCCGGGAAATCCCTTTCCC
ACAAAATATTTCTTCCACTCTATAAAAAAACAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCACCTGCATTTGCACACCTTCA
AGACTAAGAAAGACATAAGAAAGCTGAAGAGGACACTAAGGGAAGTAAGG
CAAAGGATAAGACACAGACAATTTCCCCAAGGTTGTCTGCTAAACCTGGT
CTTCCAAAGCCAGCAGTTTCAAATGACCTCTGCAAAGAAGGGGATAAGGG
GAAAGCTGATGCTGGGAGATTGTACATAATCTGTAGCATACAGAGATGCC
AAATCACACCAGGCTAAAAAAGCTGAAGGTGTGAGGATGCCAAGTGAAGT
GTAAGCATTATTTTTTTTTTTGCCTTCTCCCACCTATGCAGATTGTAGAA
TTTTGTTTTACTTTTAAAACCCTATGTTGTTAGCACACAGAACACTTCAT
TGTTTGGTGGGTGTGGGCAAACAAAGTGTCTTCCAAACTGGGTTGATGAG
GGGAAACTATACCTTTCCCTGCTGACTTTAAAAGACTCCTCTTGAATCCC
AGGAGAGACATCCTGGCGTTGACATATGTGGCCACCATGGCATAAAATAT
GTTGGGGTTATGGGGAAAATAGATTCATTTTTATATTCCATTTCTCCTCT
ACCAGAGAATTAACTCCCTTACAACAAGAGACCCATTGGGACCAGCCCTC
CTACATTTTGTTTTACTAATCCATTGAGCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_h16.g1 MSMg01no173_h16.g1 CHROMAT_FILE:
MSMg01no173_h16.g1 PHD_FILE: MSMg01no173_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:10 2005
         (285 letters)



>mm_chr3_62967474_62968163
          Length = 690

 Score =  507 bits (262), Expect = e-148
 Identities = 281/290 (96%), Gaps = 5/290 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcacctgcatttgcacaccttcaagactaagaaagacataagaaagctgaagaggacac 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agcacctgcatttgcacacctccaagactaagaaagacataagaaagctgaagaggacac 431

                                                                       
Query: 61  taagggaagtaaggcaaaggataagacacagacaatttccccaaggttgtctgctaaacc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 taagggaaataaggcaaaggataagacacagacaatttccccaaggttgtctgctaaacc 371

                                                                       
Query: 121 tggtcttccaaagc-----cagcagtttcaaatgacctctgcaaagaaggggataagggg 175
           ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tggtcttccaaagccagagcagcagtttcaaatgacctctgcaaagaaggggataagggg 311

                                                                       
Query: 176 aaagctgatgctgggagattgtacataatctgtagcatacagagatgccaaatcacacca 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 310 aaagctgatgctgggagattgtacataatctgtagcatacagagatgccaaatcatacca 251

                                                             
Query: 236 ggctaaaaaagctgaaggtgtgaggatgccaagtgaagtgtaagcattat 285
           |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 250 ggctaaaaaagctgaaggtgtgagcatgccaagtgaagtgtaagcattat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 690
Length adjustment: 9
Effective length of query: 276
Effective length of database: 681
Effective search space:   187956
Effective search space used:   187956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)