This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-173I19
Chromosome
3 (Build37)
Map Location
118,048,107 - 118,048,742
singlet/doublet
singlet
Overlap gene
none
Upstream gene
D3Bwg0562e
,
4833424O15Rik
,
EG668759
,
Snx7
,
LOC100043260
Downstream gene
Dpyd
Link
Open Mouse BAC browser
Click to get alignment info.
name
D3Bwg0562e
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:229791
MGI:106530
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
4833424O15Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:75769
MGI:1923019
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG668759
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:668759
MGI:3643222
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
Snx7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:76561
MGI:1923811
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100043260
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043260
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
Dpyd
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:99586
MGI:2139667
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
D3Bwg0562e
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142369078
GeneID:229791
MGI:106530
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
transcript_id
: NM_177664.4
name
4833424O15Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:58037432
GeneID:75769
MGI:1923019
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 4833424O15 gene
transcript_id
: NM_029425.1
name
EG668759
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94369871
GeneID:668759
MGI:3643222
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: predicted gene, EG668759
transcript_id
: XM_001003479.1
name
Snx7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142359889
GeneID:76561
MGI:1923811
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sorting nexin 7
transcript_id
: NM_029655.2
name
Dpyd
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130082
GeneID:99586
MGI:2139667
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: dihydropyrimidine dehydrogenase
transcript_id
: NM_170778.2
name
D3Bwg0562e
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33186921
CCDS:CCDS17795.1
GeneID:229791
MGI:106530
definition
GO_function
: GO:0004601 - peroxidase activity [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: plasticity related gene 1
protein_id
: NP_808332.2
name
4833424O15Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:58037433
CCDS:CCDS17796.1
GeneID:75769
MGI:1923019
definition
codon_start
: 1
exception
: mismatches in translation
note
: plasticity related gene 5
product
: phosphatidic acid phosphatase type 2d
protein_id
: NP_083701.1
name
EG668759
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94369872
GeneID:668759
MGI:3643222
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001003479.1
name
Snx7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124249214
GeneID:76561
MGI:1923811
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: sorting nexin 7
protein_id
: NP_083931.1
name
Dpyd
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:25140985
CCDS:CCDS17797.1
GeneID:99586
MGI:2139667
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IEA]; GO:0005829 - cytosol [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]; GO:0004158 - dihydroorotate oxidase activity [Evidence IEA]; GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity [Evidence IDA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO_process
: GO:0006207 - 'de novo' pyrimidine base biosynthesis [Evidence IEA]; GO:0006208 - pyrimidine base catabolism [Evidence IDA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: dihydropyrimidine dehydrogenase
protein_id
: NP_740748.1
name
LOC100043260
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100043260
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-373B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236L08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479G20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-467L07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-104B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-096J06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-195I24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-235B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-512L04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078C04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-511E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-451H06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501G04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-464E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-053N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172H10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-349F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-149P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-155O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-051L06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-172O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336P12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-454G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-289C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535L12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501C12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-274D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-109L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-269I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450I24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-100H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-494M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-088N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-146J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-279P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-462I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-179N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075K05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-370H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-190H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-370G21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-321E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-121H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-174O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-432A24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-515A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-403C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-205F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461I18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-148H21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-202E14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123J02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493E23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522L15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-277E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-154H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501M03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-443A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-313B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-094F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-161C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182B03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-169I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-466B20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-298L09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-094K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-064J19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-191P08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-173O19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-328L15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-109L07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-350D15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-023J07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-264F17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-249P15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-328M04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-023I23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-331G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-119C04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-018A17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-064L04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-140F05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-192B06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-035N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-223E15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-258G09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-204O01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332J14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-165E20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-055E22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-243N09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120P20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239M23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-121D21
singlet/doublet
doublet
plural/unique
unique
clone name
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