XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAC
ATACAAACAGCAAAGGGCATTTCTCTACCATCCCTGATTATTATGACCAG
GTCAGCACAAATCACAACCTTAGGTTAACTGACTTGAGACCTCAGTCAAG
TCTACAAAAACCATGTTCAACATTTCTGGGGTGAGTTTGATCAGTTAACT
GGGAAAAGGTATGTGGCTCCAAGTTATAAATGGATTATCCTAGAATTCTG
TCTAATATCTAAGTCAGTGAATTTATTTTACTATTTGGACCAGTTATTTA
TAAGCAAATAGTTTATGAATGGCATGTACTCTGACTGAAAGTGATGCTTT
TTAAAGAACACACCCACTTAATTTATGAAATTCCCATTGCAGTATATTAT
AGAACAAATCTAAAGTTCATACCTTTATCCTAACAACTCTCATTTTTCCT
GTCCTTTTGCAGCTGGTTACAGAACAACTTCAGGAGTTAAATATTATTGT
CAATACCCAAAACTCTTATCTAAAAACAAAAACGAATTTTTCACAGTGAC
CAAACATCAAGAAATTTGGGAGCTTATCTGACGGTAATGGATAAACTAGT
ATTATGAATAATGACTTACAAACTAAACTCTAACTACACTGGCTGTATTT
TATCCTTTTACTTTGCACCCAGTCAGAGTACAAGGGTTATATTGCTTTTA
GAGAACACA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCAAAAATCAGGTCAGCAAGCTTGACAGCCAGAGTC
TTTACACACTGAATCATTTTGTCACCCTGATTTTTGATTTTTGAGATTGT
TTTTGTCCATATGTGTTTAGGAAAATTTCCAGCAATGTCAACTCTACTGA
ATTTCTTTTGTATATTTAGGAATAATGTCATCTGAAAATTGAGATAGGGG
TATGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCACAAAG
CAAGTTGGGGAGGAAAGGGTTTATTCTTTTTACACTTCCATATTGCTGTT
CATCACCAAAGGAAGTTAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGA
GCTGATGCAGAGCCATGGAGGGATGTTCCTTGCTGGCTTGCCTCCCCTGG
CTTGCTCAGCCTGCTCTCTTATAGAAACAAGACTACCAGCCCAGAGATGG
CACCACCCACAAGGGGCCCTCCCCCTTGATCACTAATTGAGAAAATGTGT
TACAGCTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTG
TGATAACTCCAGTTGACACAAAACTAGCCAGTACAGGGTATATGTAGCTA
TTTCTTTTAATGACTACTAGAAGTTGAAGTTTTTGCTATTTCATCTGTGC
TTTAGACTTCATTGGGAGACATGG

Query= MSMg01no173_k05.g1 MSMg01no173_k05.g1 CHROMAT_FILE:
MSMg01no173_k05.g1 PHD_FILE: MSMg01no173_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:21 2005
         (547 letters)



>mm_chr3_24996986_24997932
          Length = 947

 Score =  611 bits (316), Expect = e-179
 Identities = 364/380 (95%), Gaps = 3/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcagcaagcttgacagccagagtctttacacactgaatcattttgtcaccctgatttt 60
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 378 ggtcaacaagcttgacagccagagtctttacacactgaatcattttgtcagcctgatttt 319

                                                                       
Query: 61  tgatttttgagattgtttttgtccatatgtgtttaggaaaatttccagcaatgtcaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgatttttgagattgtttttgtccatatgtgtttaggaaaatttccagcaatgtcaactc 259

                                                                       
Query: 121 tactgaatttcttttgtatatttaggaataatgtcatctgaaaattgagataggggtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tactgaatttcttttgtatatttaggaataatgtcatctgaaaattgagataggggtatg 199

                                                                       
Query: 181 tcttagtcagggtttctattcctgcacaaacatcatgaccacaaagcaagttggggagga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 198 tcttagtcagggtttctattcctgcacaaacatcatgaccacaaagcaagttggggagaa 139

                                                                       
Query: 241 aagggtttattctttttacacttccatattgctgttcatcaccaaagga-agttaggact 299
           ||||||||||||  |||||| ||||| | | ||||| |||||||||||| | | ||||||
Sbjct: 138 aagggtttattcagtttacatttccacactactgtt-atcaccaaaggata-tcaggact 81

                                                                       
Query: 300 ggaactcaagcaggtcaggaagcaggagctgatgcagagccatggagggatgttccttgc 359
           | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 80  gaaactcaagcaggtcaggaagcaggagctgatgcagagccatcgagggatgttccttgc 21

                               
Query: 360 tggcttgcctcccctggctt 379
           |||||||| |||||||||||
Sbjct: 20  tggcttgcttcccctggctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)