Query= MSMg01no174_a06.b1 MSMg01no174_a06.b1 CHROMAT_FILE:
MSMg01no174_a06.b1 PHD_FILE: MSMg01no174_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:47 2005
(189 letters)
>mm_chr3_128268623_128269210
Length = 588
Score = 321 bits (166), Expect = 2e-92
Identities = 181/186 (97%), Gaps = 3/186 (1%)
Strand = Plus / Plus
Query: 5 gaattcttatcccaaagg-gctttagtttttcagaacatgtgttctgttgatggtactat 63
|||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcttatcccaaaggtg-tttagtttttcagaacatgtgttctgttgatggtgctat 263
Query: 64 tgaaaatatgtttcttttcactatatgctgatcatatgactccgctttccttacctttat 123
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaaaatatgtttctttt-attatatgctgatcatatgactccgctttccttacctttat 322
Query: 124 agaaaaatgtaaagatcatagattacttctgaaaccttcactagagaaaaccatcaatgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaaaaatgtaaagatcatagattacttctgaaaccttcactagagaaaaccatcaatgc 382
Query: 184 ccgctg 189
||||||
Sbjct: 383 ccgctg 388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 588
Length adjustment: 8
Effective length of query: 181
Effective length of database: 580
Effective search space: 104980
Effective search space used: 104980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no174_a06.g1 MSMg01no174_a06.g1 CHROMAT_FILE:
MSMg01no174_a06.g1 PHD_FILE: MSMg01no174_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:47 2005
(292 letters)
>mm_chr3_128336699_128337390
Length = 692
Score = 542 bits (280), Expect = e-158
Identities = 289/292 (98%)
Strand = Plus / Minus
Query: 1 tcccagaagagttccgatatgccgtaaaatttgagaaccaatagattgcaccatttgtac 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcccagaagagttccgatatgccataaaatttgagaaccaatagattgcaccatttgtac 433
Query: 61 agtacgagttgaaacaaaggtatataggtgtataaagggaggcatttgtgtttcttgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtacgagttgaaacaaaggtatataggtgtataaagggaggcatttgtgtttcttgaat 373
Query: 121 ttgtgttagcacaggcatgtatagtgatggagggataatcacaaatcctttatgttaaat 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 372 ttgtgttagcacaggcatgtatagtgatggtgggataatcacaaatcctttatgttaaat 313
Query: 181 aatagaataacacggcttttattaggataaagagttaggactggatatgcagcattgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aatagaataacacggcttttattaggataaagagttaggactggatatgcagcattgatt 253
Query: 241 ttttgaattcagaatactctgctgcagttatctggatggaaaggcagttcat 292
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 252 ttttgaattcagaatactctactgcagttatctggatggaaaggcagttcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|