BAC Information

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BAC

Clone NameMSMg01-174A06
Chromosome3 (Build37)
Map Location 128,268,827 - 128,337,190
singlet/doubletdoublet
Overlap genenone
Upstream gene4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174A06.T7 (MSMg01no174_a06.b1)MSMg01-174A06.TJ (MSMg01no174_a06.g1)
ACCAG369445AG369446
length754726
length of high quality
(start - end)
189 (46 - 234)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no174_a06.b1 PHD_FILE: MSMg01no174_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:47 2005CHROMAT_FILE: MSMg01no174_a06.g1 PHD_FILE: MSMg01no174_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,268,827 - 128,269,010)(128,336,899 - 128,337,190)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATCCCAAAGGGCTTTAGTTTTTCAGAACATGTGTTCTGTTGAT
GGTACTATTGAAAATATGTTTCTTTTCACTATATGCTGATCATATGACTC
CGCTTTCCTTACCTTTATAGAAAAATGTAAAGATCATAGATTACTTCTGA
AACCTTCACTAGAGAAAACCATCAATGCCCGCTGGNCCTCANNCCCTGGN
TCCTAAGCNNNCAATTCCACCCCCAATGGTCCCCTCCAGCCTTTTACTTT
TGCCAGTGAAATCCATTTGGTGGGGCGTATTGCCCGGCTTGGGGTTCGCT
TTGGTCCCCCCCCCTTCCCCCCCTTTTAATATCTTAAACCTTTCCTTCTT
TTTCTCTCCCCTCACTTCTTCCTTTTCCCTTTTTTCCTTTTCTTATTTCT
CCCCCCCCTTTTCCTTTTTTTCCTCTCCCCCCCCCNNNNAAAAAACCCNN
CNNNNNNNNNNNNNNNGNNNNNAGAGGCNNNNTTCTTTTCGGGCCNNTTC
CGTTCTTTTCCTTTTTTTAGTTGAACCACCCNCTGCCCTTCTTTTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNAATTATGTTCGTTGNTNNNNNANNNNN
NTTTNNNNNNCCNNNNNCAGGGNCGGGGANNNNNNNNNNNNNNATATTNN
NNNNNNNNNATTTGTTTATTAANTGATGTAGTTTAAGNCTCTTTGGGTCT
TTTG
TCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAAGAGTTCCGATATGCCG
TAAAATTTGAGAACCAATAGATTGCACCATTTGTACAGTACGAGTTGAAA
CAAAGGTATATAGGTGTATAAAGGGAGGCATTTGTGTTTCTTGAATTTGT
GTTAGCACAGGCATGTATAGTGATGGAGGGATAATCACAAATCCTTTATG
TTAAATAATAGAATAACACGGCTTTTATTAGGATAAAGAGTTAGGACTGG
ATATGCAGCATTGATTTTTTGAATTCAGAATACTCTGCTGCAGTTATCTG
GATGGAAAGGCAGTTCATGTATTCTCAAGCTCTCCCACAGTTTATTTTAT
GGTGAATCAGGTCCATTTGGACTCTGGAGAAAACAAGGTTAAATGAGAAA
GTTTCCAGCCTCACAGTTTCTTGATGCTGAGGAGGGCTGGTAGTTTTGGG
AACATTCATTGATGGGCAAGTTTACCATCTTAAAAAACAATCTATATTTA
TGTGAGTTTAAAAACACATTTGTTTGTTTGTTTGTTTGCCTGTTTGCTTA
TTGGGGTTTGCCTTTGTTTTCTCCCCCGACTTTCCCCCCCCTTTTCTTTT
TCCCCCCCCTCCCTTTCCCCCCCTTTTTTCCCACTTTTCCTCGTCTCCCT
TTAATTTATACTTTTTCCCCTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_a06.b1 MSMg01no174_a06.b1 CHROMAT_FILE:
MSMg01no174_a06.b1 PHD_FILE: MSMg01no174_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:47 2005
         (189 letters)



>mm_chr3_128268623_128269210
          Length = 588

 Score =  321 bits (166), Expect = 2e-92
 Identities = 181/186 (97%), Gaps = 3/186 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatcccaaagg-gctttagtttttcagaacatgtgttctgttgatggtactat 63
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcttatcccaaaggtg-tttagtttttcagaacatgtgttctgttgatggtgctat 263

                                                                       
Query: 64  tgaaaatatgtttcttttcactatatgctgatcatatgactccgctttccttacctttat 123
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaaaatatgtttctttt-attatatgctgatcatatgactccgctttccttacctttat 322

                                                                       
Query: 124 agaaaaatgtaaagatcatagattacttctgaaaccttcactagagaaaaccatcaatgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaaaaatgtaaagatcatagattacttctgaaaccttcactagagaaaaccatcaatgc 382

                 
Query: 184 ccgctg 189
           ||||||
Sbjct: 383 ccgctg 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 588
Length adjustment: 8
Effective length of query: 181
Effective length of database: 580
Effective search space:   104980
Effective search space used:   104980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no174_a06.g1 MSMg01no174_a06.g1 CHROMAT_FILE:
MSMg01no174_a06.g1 PHD_FILE: MSMg01no174_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:47 2005
         (292 letters)



>mm_chr3_128336699_128337390
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccagaagagttccgatatgccgtaaaatttgagaaccaatagattgcaccatttgtac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcccagaagagttccgatatgccataaaatttgagaaccaatagattgcaccatttgtac 433

                                                                       
Query: 61  agtacgagttgaaacaaaggtatataggtgtataaagggaggcatttgtgtttcttgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtacgagttgaaacaaaggtatataggtgtataaagggaggcatttgtgtttcttgaat 373

                                                                       
Query: 121 ttgtgttagcacaggcatgtatagtgatggagggataatcacaaatcctttatgttaaat 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 372 ttgtgttagcacaggcatgtatagtgatggtgggataatcacaaatcctttatgttaaat 313

                                                                       
Query: 181 aatagaataacacggcttttattaggataaagagttaggactggatatgcagcattgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aatagaataacacggcttttattaggataaagagttaggactggatatgcagcattgatt 253

                                                               
Query: 241 ttttgaattcagaatactctgctgcagttatctggatggaaaggcagttcat 292
           |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 252 ttttgaattcagaatactctactgcagttatctggatggaaaggcagttcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)