Query= MSMg01no174_b15.b1 MSMg01no174_b15.b1 CHROMAT_FILE:
MSMg01no174_b15.b1 PHD_FILE: MSMg01no174_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:53 2005
(319 letters)
>mm_chr3_56498553_56499271
Length = 719
Score = 594 bits (307), Expect = e-174
Identities = 313/315 (99%)
Strand = Plus / Minus
Query: 5 gaattctttggaaaattattcttgtgcacagaagcaattgggtggggaattcagctctca 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattgtttggaaaattattcttgtgcacagaagcaattgggtggggaattcagctctca 460
Query: 65 ggagcatgaatagacctggaggctatggcacttgactcatgggctttctccaaggagcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggagcatgaatagacctggaggctatggcacttgactcatgggctttctccaaggagcat 400
Query: 125 aggtggaggcgccaacttctgccagaagttaatactctgggtgttatttgaaatatcacc 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 399 aggtggaggcgccaacttctgccagaagttaatactctgtgtgttatttgaaatatcacc 340
Query: 185 cttgataactggattaaggctactgactctacaatagagatttttctctctggaaataag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cttgataactggattaaggctactgactctacaatagagatttttctctctggaaataag 280
Query: 245 gatttggtgaactatagctgagaaagggtttctgggtcaatgaagcagagctgtaagaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gatttggtgaactatagctgagaaagggtttctgggtcaatgaagcagagctgtaagaac 220
Query: 305 atgtggcccacagct 319
|||||||||||||||
Sbjct: 219 atgtggcccacagct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_b15.g1 MSMg01no174_b15.g1 CHROMAT_FILE:
MSMg01no174_b15.g1 PHD_FILE: MSMg01no174_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:53 2005
(408 letters)
>mm_chr3_56361056_56361863
Length = 808
Score = 683 bits (353), Expect = 0.0
Identities = 395/411 (96%), Gaps = 9/411 (2%)
Strand = Plus / Plus
Query: 1 tttgttgagctctgagccccattttttaataggg-ttatttgattttctgcagtccacct 59
|||||| |||||||||||||| |||||||| ||| ||||||||||||||| |||||||||
Sbjct: 198 tttgtttagctctgagcccca-tttttaat-gggcttatttgattttctggagtccacct 255
Query: 60 tcttgagttctt----tatatatattggacattagtcccctatctgatttaggataggta 115
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 256 tcttgagttctttatatatatatattggatattagtcccctatccaatttaggataggta 315
Query: 116 aagatccttttccaatctgttggtggcctgaacttcttaatttggttttctattcctttc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aagatccttttccaatctgttggtggcctgaacttcttaatttggttttctattcctttc 375
Query: 176 tcattgtgtttcctgctgcttaggcagcagaactttgtgacagcttcttggttggctgtt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcattgtgtttcctgctgcttaggcagcagaactttgtgacagcttcttggttggctgtt 435
Query: 236 aggctgatgcaaatctct-tcctggcttctctggcagaggctgcatataccttgtataac 294
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aggctgatgcaaatctctgtcctggcttctctggcagaggctgcatataccttgtataac 495
Query: 295 tttggtcctttctgggattattttgccaccatgtcccactgcctaccacaaagctgtgcc 354
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 496 cttggtcctttctgggattattttgtcaccatgtcccactgcctaccacaaagctgtgcc 555
Query: 355 ttccctgaaaactttcccagaatcatggtgaatgtgtgggttggnggaggg 405
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 556 ttccctgaaaactttcccagaatcatggtgaatgtgtgggttgg-ggaggg 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
