BAC Information

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BAC

Clone NameMSMg01-174B24
Chromosome3 (Build37)
Map Location 19,008,938 - 19,009,449
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174B24.T7 (MSMg01no174_b24.b1)MSMg01-174B24.TJ (MSMg01no174_b24.g1)
ACCAG369519AG369520
length750745
length of high quality
(start - end)		684 (67 - 750)302 (70 - 371)
definitionCHROMAT_FILE: MSMg01no174_b24.b1 PHD_FILE: MSMg01no174_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:55 2005CHROMAT_FILE: MSMg01no174_b24.g1 PHD_FILE: MSMg01no174_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGCTCAGTATCGACTTCAAGGACTTTCTAGGAACCTCTGGAACACTGA
CAGAGGCTTAGCTAGGTCAAACTCAATCCTTAAAGGCACTTATAATAAAA
TAATACTGAAAGAGAGCACATGGATCCATACACCAGGCGGGGACAGGTTT
TGAGTATACGTGCTATTGGAATGCCAAAGTTTCAGGAGGCTAAGTTTCTG
TGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAAACCTGTAATGGG
AGTCACTACTGGAGTGGATGTAGCATTAGAGAAAAGTGACAAACTCTAAC
TCACCAGTAGAATTGGTAACAGATTCAAGGCCTCTCTTTACAATAAGCTT
AGAGCTCCCTGAAAAACTATTTTTTTAATAATAAAAAAGTAAAACTGAGA
TAGTTAACCTGACTTTGATGGAGAAATAACCCAAGGGAAAGACAGTCTTC
CTAGGGATGTAATTTGAACACCTTTGTTGTCCTACTTTTGTGAACGAAAT
ATGGAGGACTGTCTTACTTTTCACTATGTTACTCTAGTCACCAAGTTTAT
ATTTCCCAAGATGCAACTGTTTTTCATAGATTATTTGACTCCTTCCTACA
TGGGATTTAATAAATTTAGCAAAGTAATTCATAATAACTATTTTGTTATA
TTTGTATTTTTAATGTCCCCATGAAGTTCACACCAAAGTTATTTAGTTAT


CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGATCTTTCCAGAACTTTTATCATGAATGG
GTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCAAGT
GGTTTTTGACTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTT
CGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGG
ATGGATGATTGCTTTAATATGTTCTTGGATTCGGTGAGCGAGAATTTTAT
TGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGGATCTTTCTGCGCCTCCAGGTATCAGAGTAATAGTGGCTT
CATAAAATGAGTTGGGCAGAGTACCTTCTACTTCTATCTTGTGAAAAAGT
TTGTGCAGAACTGGGATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAA
CTGCTTCTATTTCTTTAGGGGACATGGGACTGTTTAGAAGGTCAACTTGA
TCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTC
GTCCAGGTTTTCCAGTTTTGTTGACCATAGCCTTTTGAATAACGATCCGA
TGTTGTCTTGTATTCCTTCTCCCTCCGTTTTCTTCCTCTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_b24.b1 MSMg01no174_b24.b1 CHROMAT_FILE:
MSMg01no174_b24.b1 PHD_FILE: MSMg01no174_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:55 2005
         (684 letters)



>mm_chr3_19008366_19009449
          Length = 1084

 Score =  990 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Minus

                                                                        
Query: 173  gctaagtttctgtgaaactctttgcctcaggactgcttccaggtttctaaacctgtaatg 232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 gctaagtttctgtgaaactctttgcctcaggactgcttccaggtttctaaacctgtaatg 1025

                                                                        
Query: 233  ggagtcactactggagtggatgtagcattagagaaaagtgacaaactctaactcaccagt 292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ggagtcactactggagtggatgtagcattagagaaaagtgacaaactctaactcaccagt 965

                                                                        
Query: 293  agaattggtaacagattcaaggcctctctttacaataagcttagagctccctgaaaaact 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  agaattggtaacagattcaaggcctctctttacaataagcttagagctccctgaaaaact 905

                                                                        
Query: 353  atttttttaataataaaaaagtaaaactgagatagttaacctgactttgatggagaaata 412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  atttttttaataataaaaaagtaaaactgagatagttaacctgactttgatggagaaata 845

                                                                        
Query: 413  acccaagggaaagacagtcttcctagggatgtaatttgaacacctttgttgtcctacttt 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  acccaagggaaagacagtcttcctagggatgtaatttgaacacctttgttgtcctacttt 785

                                                                        
Query: 473  tgtgaacgaaatatggaggactgtcttacttttcactatgttactctagtcaccaagttt 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  tgtgaacgaaatatggaggactgtcttacttttcactatgttactctagtcaccaagttt 725

                                                                        
Query: 533  atatttcccaagatgcaactgtttttcatagattatttgactccttcctacatgggattt 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  atatttcccaagatgcaactgtttttcatagattatttgactccttcctacatgggattt 665

                                                                        
Query: 593  aataaatttagcaaagtaattcataataactattttgttatatttgtatttttaatgtcc 652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  aataaatttagcaaagtaattcataataactattttgttatatttgtatttttaatgtcc 605

                                            
Query: 653  ccatgaagttcacaccaaagttatttagttat 684
            ||||||||||||||||||||||||||||||||
Sbjct: 604  ccatgaagttcacaccaaagttatttagttat 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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