BAC Information

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BAC

Clone NameMSMg01-174C18
Chromosome3 (Build37)
Map Location 58,754,133 - 58,754,335
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1
Downstream geneLOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174C18.T7 (MSMg01no174_c18.b1)MSMg01-174C18.TJ (MSMg01no174_c18.g1)
ACCAG369550AG369551
length784716
length of high quality
(start - end)
44 (43 - 86)203 (452 - 654)
definitionCHROMAT_FILE: MSMg01no174_c18.b1 PHD_FILE: MSMg01no174_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:58 2005CHROMAT_FILE: MSMg01no174_c18.g1 PHD_FILE: MSMg01no174_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCAGCCTGCTCTACAGAGTGAGTCCCTGGATAGCCAAGGCCACA
TAATGAAACCCTGTTTGATTAAACAGATATTAATCCTGACTCTTTCACTC
ACACTCATTGGGTAGGTGTGAGGGAGTATGGNTTTTTTTTTTTTTTTTTT
TTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTCTTTT
TCTTTTTTTCTTTTTTTTTTTTCTTTCTTCCTTTTTTTTTTTCCTTTTTT
TCCTTTTCTTTTTTTCTTTTCTTTTTTTTTTTTTTTCTTCCCTTTTCCCC
TCATTAAAGAAAATTTTTGGTATTTTTTTCCCCCCCCCCCCTTTTTTTTT
CTTTTCTTTTTTCTTTTTTTTTTTCCCTTCCCCTTTTTTTAAATTTTTTT
TTTTTTTTCGCTCTTCTTTTTCTTTTTTTTCCTCTTCCCTTTTTTTTTTT
TCCCTTCCATATTTTTTTTTTTTTTTTTTTTTTTTTATCCCCTTTTTTTT
TTTTTCTTTTTTTTTTTTTTTTTTTCCCTTCTTTTTTTTTTTTTCTTCTT
TTTTTCCTTTTCTTTTTTTCCCTCTCCCCTTTTTTTCTTTTTTTTCTTTC
CTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTCCTTTTTTTTTTTCT
TTTTTTTTTTTTTTTTTTTCTTTTCTTTTTTTTTCTTTTTTTTTTTTTTT
TTTTTCTTTTTTTTTTTCTCCTTTTTTCATTTTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGAAATAATCTAAAACTCTAAGAGCCAACAGCAGAA
GGACGCACAAAATGAATTTAACCCTCTCCACTTCCCTGGGATTTGGTGTG
GTTGAACTTTCCAGAATGTGTTCTCAGTCATGTTCAAATGCCCAGTTCTG
CGGTTTGCAGGGACAAGTCTCTCTCACCTGAGCTCTTCGGAAGGCTGTGT
TAGCTGGATGGAGGGCTACTTCTCTATGACACGGTAGAGTTGAATACTTT
GGGAAAGACAATGTGATGAATTTTTATGGCCTGGGNATTATGCCTTTTCC
AAATATAATGTTTATGNCCTCAAACCTAGGCCAAAATTAANTCTCCAAAC
CTTTATCTCTAGAANGTATGTAAACCGCATTGCTATCCCTCAGACCTTCG
AGACTCACTTCCATCTTGTTCTCAACAGTCCATTCTGTCACCCATATTTT
GAACATGATCATGTATACATATGACTTTTCTTGCTGTCTTTGTACACTCG
TAACATAAATATTTCTCAAGTCCTTTCAGGCTATGCACAGGGTTATCCAT
GTTGCTAGCTGTTCAGTTGAACAGTGTGCCAAGATGACCCTTCCTTTTTG
ATTGTCATTATTGATATACATACCTCCCATTTTAACATCCTTCAGGTTCT
TCTTTGTTTCATTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_c18.g1 MSMg01no174_c18.g1 CHROMAT_FILE:
MSMg01no174_c18.g1 PHD_FILE: MSMg01no174_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:58 2005
         (203 letters)



>mm_chr3_58753933_58754535
          Length = 603

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactcacttccatcttgttctcaacagtccattctgtcacccatattttgaacatgatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactcacttccatcttgttctcaacagtccattctgtcacccatattttgaacatgatca 260

                                                                       
Query: 61  tgtatacatatgacttttcttgctgtctttgtacactcgtaacataaatatttctcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatacatatgacttttcttgctgtctttgtacactcgtaacataaatatttctcaagt 320

                                                                       
Query: 121 cctttcaggctatgcacagggttatccatgttgctagctgttcagttgaacagtgtgcca 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcaggctatgcacagtgttatccatgttgctagctgttcagttgaacagtgtgcca 380

                                  
Query: 181 agatgacccttcctttttgattg 203
           |||||||||||||||||||||||
Sbjct: 381 agatgacccttcctttttgattg 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)