BAC Information

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BAC

Clone NameMSMg01-174H06
Chromosome3 (Build37)
Map Location 49,305,714 - 49,453,979
singlet/doubletdoublet
Overlap geneLOC100039579, LOC100039587, LOC638779
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247
Downstream genePcdh18, LOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174H06.T7 (MSMg01no174_h06.b1)MSMg01-174H06.TJ (MSMg01no174_h06.g1)
ACCAG369746AG369747
length692690
length of high quality
(start - end)		257 (436 - 692)291 (84 - 374)
definitionCHROMAT_FILE: MSMg01no174_h06.b1 PHD_FILE: MSMg01no174_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:19 2005CHROMAT_FILE: MSMg01no174_h06.g1 PHD_FILE: MSMg01no174_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,453,723 - 49,453,979)(49,305,714 - 49,306,004)
sequence
NNAAAACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATAATTTCTGACAGGGTATTTTTATCAATACTTCCAT
ACTTGGATATGACAATGATGATTATCTTTTATATTAACATATTAACTACT
TTACATGAAATCTCCAATTTAATATGTGTTCTCCCCAAAATTCCACAGTT
CTGCTTTAATGTTACATGGGATGTTATTTTTCAAAGGATTATAACAAAAT
AAGCCTGAGTTGTATTTTCTTTTTATAAAAATTAAGTATTTTCTTTCCTC
AGTTAACCTTGCCTTTATTATAGAAAGTACTAAGAAGTACTTTTAGTTCA
AATGAAAAGTATGAAATTATTTTATGGCTGCATCCACTTCAAAGAATACC
TTGTAAACTTGCTATCAGGATACAAAATTACTATGTATTTCTAGCAGACT
ATTCATAAAGCATCTCATAATAACTTGTTGCTCTGAATGGTCATGTCACT
GCTCCATTTTCTTCCTTTCCCTTCCATGCTTACAAAGCTTAAAACTGAAT
GTAATTTTGAGGATTCCTGGTTGCTAGTCTATAAATAATGGGTCAGAAAG
AGTTTCTGTCAGAAGATCATAGAATATCATAGAGAAATGAATGGATTATT
TATATACACACTACAAAGCTCTGAGTCTGAATCATCAAAGAA

NNNTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGAAGGTGACTACT
CAGAATATCAAGTTGAGGAACTGGCTCAGTGCAACACATTACACAGTGTT
AATCATTCCACATCCTATAGAGTCAAGATCTGCTTAATAGTTTATCTGCC
AAATGAATGAGTTCTGTTCCAGCCTTTGAAGCTGCTTCTGCCAATTCTTC
CCTTTCTTCTCAAGTTATTCCTTGAAAAGTATCAACTGCTCAGTACTTTC
CTGGACAAAACGGTGGGGCTATTTATAGGGAGTCAGACTTGTATGCAGAA
TTCTCTCTACTCTAGGAATAGAGCCTGCAAATCAGCTCTTGGTTCTTCCT
AGAGCATCTACTCAGCCTTCTTGACTTGGTGAGTTCTCCAAGTCTGTGCC
AAAGTCTAAACCCTTTTATCAAGGCAGAAACTGGCACTGGGTTTCCTTGA
TGCGCTTTCCTTTGCTTCCCTCCTAATGAGTGTCATGATTCTTGTTGGCT
TGTTTTTTGGTGTGAGAAAGAATCTATTTTCATTCTCTACTTTGTGTTGT
TAGGGTATTTCTAGTGAGTTTATAAACTTGTTTCCTATTAATACATCCAT
TAGAGGTTTTATTAGATTGTGCATAGATTGTGCATCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_h06.b1 MSMg01no174_h06.b1 CHROMAT_FILE:
MSMg01no174_h06.b1 PHD_FILE: MSMg01no174_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:19 2005
         (257 letters)



>mm_chr3_49453523_49454179
          Length = 657

 Score =  497 bits (257), Expect = e-145
 Identities = 257/257 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttctagcagactattcataaagcatctcataataacttgttgctctgaatggtcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatttctagcagactattcataaagcatctcataataacttgttgctctgaatggtcatg 398

                                                                       
Query: 61  tcactgctccattttcttcctttcccttccatgcttacaaagcttaaaactgaatgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcactgctccattttcttcctttcccttccatgcttacaaagcttaaaactgaatgtaat 338

                                                                       
Query: 121 tttgaggattcctggttgctagtctataaataatgggtcagaaagagtttctgtcagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttgaggattcctggttgctagtctataaataatgggtcagaaagagtttctgtcagaag 278

                                                                       
Query: 181 atcatagaatatcatagagaaatgaatggattatttatatacacactacaaagctctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atcatagaatatcatagagaaatgaatggattatttatatacacactacaaagctctgag 218

                            
Query: 241 tctgaatcatcaaagaa 257
           |||||||||||||||||
Sbjct: 217 tctgaatcatcaaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no174_h06.g1 MSMg01no174_h06.g1 CHROMAT_FILE:
MSMg01no174_h06.g1 PHD_FILE: MSMg01no174_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:19 2005
         (291 letters)



>mm_chr3_49305514_49306204
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggaaggtgactactcagaatatcaagttgaggaactggctcagtgcaacacattaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggaaggtgactactcagaatatcaagttgaggaactggctcagtgcaacacattaca 260

                                                                       
Query: 61  cagtgttaatcattccacatcctatagagtcaagatctgcttaatagtttatctgccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgttaatcattccacatcctatagagtcaagatctgcttaatagtttatctgccaaa 320

                                                                       
Query: 121 tgaatgagttctgttccagcctttgaagctgcttctgccaattcttccctttcttctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatgagttctgttccagcctttgaagctgcttctgccaattcttccctttcttctcaa 380

                                                                       
Query: 181 gttattccttgaaaagtatcaactgctcagtactttcctggacaaaacggtggggctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttattccttgaaaagtatcaactgctcagtactttcctggacaaaacggtggggctatt 440

                                                              
Query: 241 tatagggagtcagacttgtatgcagaattctctctactctaggaatagagc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagggagtcagacttgtatgcagaattctctctactctaggaatagagc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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