BAC Information

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BAC

Clone NameMSMg01-174I07
Chromosome3 (Build37)
Map Location 80,759,996 - 80,760,188
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb
Downstream geneEG626841, Pdgfc, LOC229443, LOC100041901, Ctso
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174I07.T7 (MSMg01no174_i07.b1)MSMg01-174I07.TJ (MSMg01no174_i07.g1)
ACCAG369792AG369793
length719711
length of high quality
(start - end)
316 (44 - 359)194 (126 - 319)
definitionCHROMAT_FILE: MSMg01no174_i07.b1 PHD_FILE: MSMg01no174_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:24 2005CHROMAT_FILE: MSMg01no174_i07.g1 PHD_FILE: MSMg01no174_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAATGAAACTGAGCTGGAAGCTTCATCCTGCTGGGCAGCTTTTACA
GTTCTGGAAAGTGCTATGTGACTCCTAGTGAGTGAGGTAGTGGGAGTCAG
AAATCTTACCTATCTATGAATCCTATAAACTACAAGACCAACTTTCCAGG
AAGGATATACCCACTTGAGTTACAGTGGCATGACTCTTATGAAGATATCT
AACCACTTGCTGATTAAATTTGAACCTAGATGGGGTAGGGTCTATTGAAA
CTGAAAATCTGTTTAATACTTCATGGTGTGGAAGAATATAGGATCAGAGC
AGAACTTTTTTATTTCGCCCCCCCCCCCTGACATAGTGACAAACCACTAC
TTCAAAAAATATATTTTTATGACAATAGACAGCTACCATTCTCAGACATA
ATCAGAGAAGTCTCTTTCTTCAGAACTGCAGGAAACACTGATGCGGTTTG
TGCAAAGTGTTATAAATAACCAATAGTTGACTGCTCAGCTGTTTAATTGA
AGCATGACATCAATAACACCCCCCTCAGAATCTGATAACATTGTGAGATA
CAGTGAAAGAGGCATAAGTACCAACAGATAGAGAAAAGGGCAGTAGAAAC
AATAGCTGTGGGTGACTGTGCTGATTGAATAAAATAAATCTGCTACCATT
GAGGCCAGAATGAGAGAAG
AGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAAAAAAATATAATCACCAAGGCAGGGCTGATAAAGA
TAAATAAAAGTAGACTTTANTCAACATCAAGAACCATTCTAAAGGTACAG
TAAGTAAATCAACATAATATCTATGCAAAGACAGCCTAGTTCCACCATGG
AACAGAACAGAAGATCTAAAGACCCCTCTCCACCCTTTATCAGTTTGTTA
ATATATGTAGTGAGGTACATGTAGTCTATTTTGCCCTTCAAAGGAAAAGG
CTTATTCTCCCATCTAATTTTTTTTCTTGAAGTTGATCATCGNCAATTCT
CCTTCTTTGTTTTCTTTTCACCCCCCCACCCGTGGTCACCCCCTCTTCTA
AGTTAGTCTGCACCCCTCACAAGGACAAAAAGACACAGCTACTCATTAAT
CTGGGTAACTCTGGAAGGCTCCAAATCTATTCATGGAATCCACCAAAGCT
TTTGTAGAGATGGCTTGTAAGAATATCTTCTATTTCTGATGTCACTTCTT
TTCAGTTTCATCTATACTTAAGTGGAATCCCATGAGTGCTTCTTAAATGC
CTGGTGAGATCATCTTTGTCTAGGAATCTGCTCCACATAAAAGCAAAATT
GCTGTTTTTATTGCCAGGACTCTGTATAAAAAAATAAATAAGCGATGTTA
TAATGTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_i07.g1 MSMg01no174_i07.g1 CHROMAT_FILE:
MSMg01no174_i07.g1 PHD_FILE: MSMg01no174_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:24 2005
         (194 letters)



>mm_chr3_80759796_80760390
          Length = 595

 Score =  342 bits (177), Expect = 6e-99
 Identities = 189/193 (97%), Gaps = 1/193 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaagaaccattctaaaggtacagtaagtaaatcaacataatatctatgcaaagacagc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atcaagaactattctaaaggtacagtaagtaaatcaacataatatctatgcaaagacagc 334

                                                                       
Query: 61  ctagttccaccatggaacagaacagaagatctaaagac-ccctctccaccctttatcagt 119
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 333 ctagttccaccatggaacagaacagaagatctaaagacaccctctccaccctttatcagt 274

                                                                       
Query: 120 ttgttaatatatgtagtgaggtacatgtagtctattttgcccttcaaaggaaaaggctta 179
           ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 273 ttgttaataaatgtagtgaggtacatgtagtctattttgcccttcaaaagaaaaggctta 214

                        
Query: 180 ttctcccatctaa 192
           |||||||||||||
Sbjct: 213 ttctcccatctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 595
Length adjustment: 8
Effective length of query: 186
Effective length of database: 587
Effective search space:   109182
Effective search space used:   109182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)