Query= MSMg01no174_n13.b1 MSMg01no174_n13.b1 CHROMAT_FILE:
MSMg01no174_n13.b1 PHD_FILE: MSMg01no174_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:48 2005
(321 letters)
>mm_chr3_150694293_150695009
Length = 717
Score = 571 bits (295), Expect = e-167
Identities = 310/317 (97%), Gaps = 4/317 (1%)
Strand = Plus / Minus
Query: 4 ggaattccagaaaggttcaacatttattttatttccaaaatgacaagagagttttcatca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattccagaaaggttcaacatttattttatttccaaaatgacaagagagttttcatca 457
Query: 64 aaatcatagaggaactgtgaaaagatatttcaatagttagaattatcaagtaggggagga 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 456 aaatcatagaggaactgtgaaaagatatttcagtagttagaattatcaagtaggggagga 397
Query: 124 ttgagaatatgaaagagtatgagtatggagaacaaatacaggcattcagatcactgtgaa 183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 396 ttgagaatatgaaagagtatgagtatggagaacaaatgcaggcattcagatcactgtgaa 337
Query: 184 attataacaaaactcacgtttctctgaagtatgtccctgtttgtgagtcacataatgctt 243
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 336 attataacaaaactcacgtttctctgaagtatgtctctgt----gagtcacataatgctt 281
Query: 244 attcctccataattcctacagtgaagttctaaatctcagtggtatgttagctccaggtgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attcctccataattcctacagtgaagttctaaatctcagtggtatgttagctccaggtgg 221
Query: 304 gtccttggacataatta 320
|||||||||||||||||
Sbjct: 220 gtccttggacataatta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 717
Length adjustment: 9
Effective length of query: 312
Effective length of database: 708
Effective search space: 220896
Effective search space used: 220896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_n13.g1 MSMg01no174_n13.g1 CHROMAT_FILE:
MSMg01no174_n13.g1 PHD_FILE: MSMg01no174_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:48 2005
(670 letters)
>mm_chr3_150542574_150543643
Length = 1070
Score = 1098 bits (568), Expect = 0.0
Identities = 645/671 (96%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 1 tcagaccatctagaggaatcagtaagacaacctaagaatgagaataaagccatcttcaac 60
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 201 tcagaccatctagaggaatcagtaagacaacctaagaatgagaacaaagcaatcttcaac 260
Query: 61 ttcagtccaggattccatatggaggactctgcatccccaggaagaaaatatgggaaac-t 119
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |||| |
Sbjct: 261 ttcagtccaggattccatgtggaggactctgcatgcccaggaagaaaagatgg-aaacct 319
Query: 120 gtctgtaccttcaattatagctttggcccaactgtcataactgtagatttccaaagtctt 179
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 320 gtctgtaccttcaattatagctttggtccaactgtcataactgtagatttccaaagactt 379
Query: 180 cacaggcttaattccattctgggaagctctcttgccttagtaactattccaaaggaagaa 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cacaggcttaattccagtctgggaagctctcttgccttagtaactattccaaaggaagaa 439
Query: 240 cgacctgatgccccagatcccaagttgctataacagccactcctggtaactaccctgttt 299
| |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 440 caacctgatgtcccagatcccaagttgctataacagccactcctggtcaccaccctgttt 499
Query: 300 tagtggtctgtagccagtagctgactctctcagagtactggccaatgtgtatcttaagag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tagtggtctgtagccagtagctgactctctcagagtactggccaatgtgtatcttaagag 559
Query: 360 gtcaagacagtcctctattcaagaagctctccatggtaaatatcaaattgtcaatcacac 419
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 gtcaaaacagtcctctattcaagaagctctccatgataaatatcaaattgtcaatcacac 619
Query: 420 ttaggtagcatgtcacatggacaaaattaaagtgaggaacgcaggtcaaagagaatggtc 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 620 ttaggtagcatgtcacatggacaaaattaaaatgaggaacgcaggtcaaagagaatggtc 679
Query: 480 agacaaggacatcctgatagttgcattcagatgaatatatggtatgtcattaaaccattt 539
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 680 agacaaggacatcctgatagttgcattcagatgaatatctggtaagtcattaaaccattt 739
Query: 540 agtttcttagagagggatattttaaggtgtaatgctattttcctatttcataacttgttc 599
||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 740 agtttcttagagaagaatattctaaggtgtaatgctattttcctatttcataacatgttc 799
Query: 600 ttacttatatgtactttaaaaagaatttttatttataaagttaanattaaatctctcctt 659
|||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 800 ttacttatatgtactttaaaaagaatttatatttatatagttaaaattaaatctctcctt 859
Query: 660 ccatcctcttc 670
|||||||||||
Sbjct: 860 ccatcctcttc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
