BAC Information

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BAC

Clone NameMSMg01-174O09
Chromosome3 (Build37)
Map Location 67,009,819 - 67,010,053
singlet/doubletsinglet
Overlap geneRsrc1
Upstream geneVeph1, Ptx3, LOC625115, Shox2
Downstream geneMlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174O09.T7 (MSMg01no174_o09.b1)MSMg01-174O09.TJ (MSMg01no174_o09.g1)
ACCAG370059AG370060
length724742
length of high quality
(start - end)
314 (46 - 359)239 (128 - 366)
definitionCHROMAT_FILE: MSMg01no174_o09.b1 PHD_FILE: MSMg01no174_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:52 2005CHROMAT_FILE: MSMg01no174_o09.g1 PHD_FILE: MSMg01no174_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATTTAGCTCTATACCCCATTTTTAAATAGGGTTATTTGGTCT
CTGGAGTCCAACTTCTTGAGTTCTTTGTATATGTTGGATATCAGCCCTCT
AATATATAGATTTGGTAAAGATATTTTCTCAATCTGTTGGTTGCCATTTT
CTCGTATTGACAGCGTCCTTTCCCTTACAGAAGCTTTGCGATTTTATGAG
GTCCCATTTGTCAATTCTTGATCTTAGAGCACAAGCTATTGGTGCTCTGT
TCAGGAAATTTTCCCTGTGCCCATGTGTTTGAGGCTCTTCCCCACTTTCT
CTTCTATTATTTTCAGCGCCCCTCGCCTCTATGTGGAGGTCTTTGATCCG
CTTGGACTTAAGCTTTTTTTCCTCTCACTTTTACAGCAAGTGCCCTTATC
CAGTCAGGCATCTCCCTGTACCCTTAATTATATTATTTTTTAACACTAAG
TGTGATTTATGATTATTTAAGGGGAATTTTCATCATTTACTAGCTCTATA
GAAAGTAATTAAGAATTGTGTCTTGTGGCCAGTCCTCCATACATCACAGA
AATAATGTAAAAGCACAAAACTCAGTTTGTGAGGACTCACTGGAGTTAAA
ATACATAAGATACTTAGAATATTGCTGGCACCTTCTTTCCCTTTAGTTTT
TACTATTCACGATCTCACCTTAAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTTTGTTGGGTCCTTCTGTGG
TTTATCAGAGTAACTGTTTTTTTCTACAATTATTTAAATAGTGTTCCTTC
TGTTCCATTTTTAGGAATAGTTTGAGGTGTATTGATATTAGCGCTTCTTT
GAAGATCTTGTAGAATTCTGCATTAAAACTGTCGGGTCCTGGGTCAGAAA
ATACTTAGTTTTAGAGTCTGACTTCCGAGATATACTAGACTTCAATTGAT
ACTTTATTTCAATTCAGATAGGTCATTTAAATGTTTCTATATGTAAGGAA
GTAATATAGTTTTATATTCTCTGTTCTACCTCACTCATTTGTACCTTATT
ATTAGGCGTATAGTAATTTGCGCTATTGATAAATGATACAGTTAGGTAGT
AGCCAAAGAGCTTCATGATTCTTTGATTTTATTAATAAATGATAATTTGA
CTATTAGGTTGTGAACTATTACTGTGACAGTATTTAGATGGATAGTATCA
GTGATAGTGATAAGGCTTTCTAAGTTTTTATACCTAGTAGGACTTTAATT
ATAAAAAATCTATTTGTTAAAACTGACCTATCTATATCTTTTGTGGCTCA
TTTTTAGCCTCCAGCTGAGCAGGCCAAAGCCAGACTGCAATTGGTCCTTG
AAGCTGCTGGTAAGTTTTAACAATTAACCTTTATGAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_o09.g1 MSMg01no174_o09.g1 CHROMAT_FILE:
MSMg01no174_o09.g1 PHD_FILE: MSMg01no174_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:52 2005
         (239 letters)



>mm_chr3_67009619_67010257
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattatttaaatagtgttccttctgttccatttttaggaatagtttgaggtgtattgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattatttaaatagtgttccttctgttccatttttaggaatagtttgaggtgtattgata 260

                                                                       
Query: 61  ttagcgcttctttgaagatcttgtagaattctgcattaaaactgtcgggtcctgggtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagcgcttctttgaagatcttgtagaattctgcattaaaactgtcgggtcctgggtcag 320

                                                                       
Query: 121 aaaatacttagttttagagtctgacttccgagatatactagacttcaattgatactttat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 aaaatacttagttttagagtctgacttccgagacatactagacttcaattgatactttat 380

                                                                  
Query: 181 ttcaattcagataggtcatttaaatgtttctatatgtaaggaagtaatatagttt 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaattcagataggtcatttaaatgtttctatatgtaaggaagtaatatagttt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)