BAC Information

Click to search

BAC

Clone NameMSMg01-174O13
Chromosome3 (Build37)
Map Location 118,380,036 - 118,380,271
singlet/doubletsinglet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174O13.T7 (MSMg01no174_o13.b1)MSMg01-174O13.TJ (MSMg01no174_o13.g1)
ACCAG370067AG370068
length808737
length of high quality
(start - end)
86 (45 - 130)239 (125 - 363)
definitionCHROMAT_FILE: MSMg01no174_o13.b1 PHD_FILE: MSMg01no174_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:52 2005CHROMAT_FILE: MSMg01no174_o13.g1 PHD_FILE: MSMg01no174_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGATNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNG
ATTCTCTGTTTAGTTGTATACCTCACTTTTTGATTGGGTTGTTTGGGTTT
TGGGTGGATANCTTTTTGACTTCTTTGAANAATAGTCCTCTATCAGAGGT
TAGTGAAGATTTTTTTCCTGTACCCTTAGAGCTCCCTAGGACTATAGTAC
AGATCATAGAATACACTTGGTGTGACTCATGTCCCTATCTGAATATGCAT
TTGGTGATGTTCCAATTACTTATTTTTGTCTCCACAGGTCTTTGTACCTG
TGAACACCCCACACTTTTTTTTTTTTTTGACCGCGAAATTTTTTAAAAAA
AAAAAATTTTTGTGTTTTTCCAAAAACAAACCCCCGTATGTAAATAATAG
TGTTTTGTTGTTTGTGTTCCCCCCTCTATAAAAATAAAAAAAAAAGGGGG
GGGGGGGGGGGGGCCTCTAAAATTTTTTTAGACGCTCATCGTTTTGTATA
AATAAAATCAACCTTTTCTTTAACCTTTTTCCTACCCCCCTCTTCTTTTT
CCCGCCACAATTTCTCCCCTTTTTTTTCTTTTTTCCCCCGCTAAATAATA
TCGATTTATCTCACTTAAACCCACTTTTTTTTGGTATCCTGTCACCCCGC
CGGCTCCCTCTTTCTTTTCCTGTTTTTAAGACAACACCCCCACAACCACA
TTCGGATTATCTTTTCTTATCTCTCTCTGTATCTTTTCGCCCCCCCCCAC
TTCTCTTATTTTTTTTTCTCCCACGATTCTATATTCACCGACCTTGCATG
TGACTCAG
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAGCAGAAATGGAGCAGTAAGAG
TTTTACTGGGACAGTGATAGCACCCAGACCCCAGAACAGGTTTGGGGCAG
CATTAGACATTCAGAAATAATTTAGGCAAACATCAGTTAGCAAAGGGACT
GATATTGGCAGGCTCTGTGAAAATATTTTTGTTAGACTTTGATGCAGATC
AACTTTATATAGAATCTAGTGTTCTGTAAAACAAAAAAAATTAAATATTT
CAAGGAATTTTTTTAGAACTTTTATGGTTTTAATGATAATTTGGGGTGTA
AAACTATAATATTTTTACTGTCCTCGCGCCCCCCAGAGTACAGGGAGAAA
GCACCTTGTAGGGATAGAGACCATTATTTGCCTTTTTAAAAAATATTACT
TTCACATCTGTAACACATCAGGTGATGATTACAGACCTGAAGGATACAGG
TTGTGCCCTTGAGGAACTAGTCATTCAGTGGAAGTGAAGGGTGGGAAGGT
CATATCTCCAGGCTGTATACTTGAGCTCTTCTCTGCTTCCACACACTTAA
CAGTAGCTCCTTTCTTTATCCTCTGTCATAGGTTTGGCTTGGCAATGGAA
GCATCCTTTTCCCCATCAGGTCATTTCTATCCCAGGCCTTCAGTGATTTT
AGGTGTCCTCGGTTGCACCCTTGAATGCTTAACTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_o13.g1 MSMg01no174_o13.g1 CHROMAT_FILE:
MSMg01no174_o13.g1 PHD_FILE: MSMg01no174_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:52 2005
         (239 letters)



>mm_chr3_118379835_118380473
          Length = 639

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%), Gaps = 2/237 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   agaccccagaacaggtttggggcagcattagacattcagaaataatttaggcaaacatca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agaccccagaacaggtttggggcagcattagacattcagaaataatttaggcaaacatca 261

                                                                       
Query: 62  gttagcaaagggactgatattggcaggctctgtgaaaatatttttgttagactttgatgc 121
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttagcaaagggactgatatcggcaggctctgtgaaaatatttttgttagactttgatgc 321

                                                                       
Query: 122 agatcaactttatatagaatctagtgttctgtaaaacaaaaaaaattaaatatttcaagg 181
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 322 agatcaactttatatagaatctagtgttctgtaaaacaaaaaag-ttaaatatttcaagg 380

                                                                    
Query: 182 aattttttt-agaacttttatggttttaatgataatttggggtgtaaaactataata 237
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattttttttagaacttttatggttttaatgataatttggggtgtaaaactataata 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)