Query= MSMg01no174_p04.b1 MSMg01no174_p04.b1 CHROMAT_FILE:
MSMg01no174_p04.b1 PHD_FILE: MSMg01no174_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:55 2005
(675 letters)
>mm_chr3_99619600_99620678
Length = 1079
Score = 1270 bits (657), Expect = 0.0
Identities = 668/673 (99%), Gaps = 4/673 (0%)
Strand = Plus / Minus
Query: 6 attctaagatttttatgacaccataatcataaacctacccatgttgacctggcacatggt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 attctaagatttttatgacaccataatcataaacctacccatgttgacctggcacatggt 698
Query: 66 acagagtattgatgtacccataaacatttaaatgcaataattttgcagtgtttgaaatct 125
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 697 acagagtattgatgtacccacaaacatttaaatgcaataattttgcagtgtttgaaatct 638
Query: 126 actgcaatagatcatgagtatatttacatgtcaaccca-ttttttcaagtgctttttgtg 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 637 actgcaatagatcatgagtatatttacatgtcaacccatttttttcaagtgctttttgtg 578
Query: 185 gatttatagtattccaatgtagtccatttaacaaatgccttgatttctagtaggactctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gatttatagtattccaatgtagtccatttaacaaatgccttgatttctagtaggactctc 518
Query: 245 ccaagccctgatatttcatagtatatcagtgccagtaaataattcgacctaaattttctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ccaagccctgatatttcatagtatatcagtgccagtaaataattcgacctaaattttctg 458
Query: 305 aatatcattcc---ttttttttttttaagtaagtgatagtcaaagactgtactactttta 361
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatatcattcctttttttttttttttaagtaagtgatagtcaaagactgtactactttta 398
Query: 362 aggttctgaaaacttgagagaccgcctttcagaggattatctcctgctagcagtcagctg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aggttctgaaaacttgagagaccgcctttcagaggattatctcctgctagcagtcagctg 338
Query: 422 tgactctgacagttctcgctggatcacacctttctggtgacagaagtctaccccatgagc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgactctgacagttctcgctggatcacacctttctggtgacagaagtctaccccatgagc 278
Query: 482 ccttctgggagacgttaaaccttcccagggcacccctcctctcacagtggaaaagaatta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ccttctgggagacgttaaaccttcccagggcacccctcctctcacagtggaaaagaatta 218
Query: 542 aagacaggtgaaaacatagttattaaatgcaaggacttagcagttagaatttggttcaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aagacaggtgaaaacatagttattaaatgcaaggacttagcagttagaatttggttcaga 158
Query: 602 atttggctccgcagctcataagccctgagcaagctacttcactcctgttaactggtttct 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atttggctccgcagctcataagccctgagcaagctacttcactcctgttaactggtttct 98
Query: 662 catctgtcaagct 674
|||||||||||||
Sbjct: 97 catctgtcaagct 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1079
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1069
Effective search space: 710885
Effective search space used: 710885
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_p04.g1 MSMg01no174_p04.g1 CHROMAT_FILE:
MSMg01no174_p04.g1 PHD_FILE: MSMg01no174_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:55 2005
(649 letters)
>mm_chr3_99602750_99603798
Length = 1049
Score = 1205 bits (623), Expect = 0.0
Identities = 641/647 (99%)
Strand = Plus / Plus
Query: 1 aggtcctctgaacaggcatcaagctctcttactactaaaagacatatttttatcctctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcctctgaacaggcatcaagctctcttactactaaaagacatatttttatcctctaa 260
Query: 61 gtttcttcttaaccagaaaggaaaaacagaagaaaatgattttaagttggataggcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcttcttaaccagaaaggaaaaacagaagaaaatgattttaagttggataggcagtg 320
Query: 121 gatggaaggaagaggatactttatgagccagtagagaaaagagcagaaagtccaagcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggaaggaagaggatactttatgagccagtagagaaaagagcagaaagtccaagcatc 380
Query: 181 ccgcccaaggccagagagctagtgtgtcacctagcaggaatctgaactctgtactagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgcccaaggccagagagctagtgtgtcacctagcaggaatctgaactctgtactagact 440
Query: 241 ttatttcataattgtgggtcatgcattttcttagaaataaaagcagagacagaagaaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatttcataattgtgggtcatgcattttcttagaaataaaagcagagacagaagaaaac 500
Query: 301 ttccagtgtccttattctatgaaagtgattagtcaaagtaccagctaattgattgtagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccagtgtccttattctatgaaagtgattagtcaaagtaccagctaattgattgtagga 560
Query: 361 ttgaccgatgtgaaacgaaagatgaaacagaagaaaaataggcaccatcatcttagaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaccgatgtgaaacgaaagatgaaacagaagaaaaataggcaccatcatcttagaaac 620
Query: 421 ataaattattaaacatctagtagtgtctgaaaggaaatgtcttagcactaggtttgttgg 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 ataaattattaaacatctagtagtgtctgaaaggaaatgtcttagcattaggtttgttgg 680
Query: 481 ttctttttcttaatttcacaattggtctgtataagaccaaaaaagaaatgaacagcaaaa 540
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 681 ttctttttcttaatttcacaattggtctgtataagactaaaaaagaaatgtacagcaaaa 740
Query: 541 gcagtatacgtttacaacaaaaagagcagagggtgatgatgaaactccccagaacaactt 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 gcagtatacgtttacaacaaaaagagcagagggtgatgatgaaactccctagaacaactt 800
Query: 601 cactcttcatggcacgagctccttattcaagtcacctgagccctctg 647
||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 801 cactcttcatggcacaagctccttattcaagccacctgagccctctg 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
