Query= MSMg01no175_b20.b1 MSMg01no175_b20.b1 CHROMAT_FILE:
MSMg01no175_b20.b1 PHD_FILE: MSMg01no175_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:07 2005
(484 letters)
>mm_chr3_70324825_70325708
Length = 884
Score = 644 bits (333), Expect = 0.0
Identities = 388/411 (94%), Gaps = 9/411 (2%)
Strand = Plus / Plus
Query: 9 tcatttatacttgagttttaaaaaatatcagtaagagctgcatggtggtggcacacaact 68
||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||
Sbjct: 201 tcatttatacttgagtttttaaaaatatcagtaagagctgggtggtggtggcgcactcct 260
Query: 69 ttgatcccagcacttgagaggcagaggcaggcagatttctgagttcgaggccggcctggt 128
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ttgatctgagtacttgagaggcagaggcaggcagatttctgagttcgaggccagcctggt 320
Query: 129 ctacaaagtaagttccaggaaagctagggctacacagacaaaccctgtctcaaa------ 182
||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ctacaaagtgagttccaggatagctagggctacacagacaaaccctgtctcaaacaaaca 380
Query: 183 --caaacaaacaaacaagcaaacaaaatatcagtaagatgacagtatctgatgtttatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaaacaaacaaacaagcaaacaaaatatcagtaagatgacagtatctgatgtttatca 440
Query: 241 gctgaattcatgaagacaatgtgtcatgtcttttaatatttttagttatttaggtgatta 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gctgaattcatgaagacaatgtgtcatgtcttttaatatttttagttatctaggtgatta 500
Query: 301 gtataattattttcaggtaaaccaattgtgtcagcctggtctacaaaagtgagttccagg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gtataattattttcaggtaaaccaattgtgtcagcctggtttacaaaagtgagttccagg 560
Query: 361 acagccagggctatacagaaaaaccctgtctcanaaaaaaaaaaaaaaaaa 411
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 acagccagggctatacagaaaaaccctgtctca-aaaaaaaaaaaaaaaaa 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no175_b20.g1 MSMg01no175_b20.g1 CHROMAT_FILE:
MSMg01no175_b20.g1 PHD_FILE: MSMg01no175_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:07 2005
(604 letters)
>mm_chr3_70404304_70405305
Length = 1002
Score = 1152 bits (596), Expect = 0.0
Identities = 602/604 (99%), Gaps = 2/604 (0%)
Strand = Plus / Minus
Query: 1 catatgaaaggaaaaatacttttgtcattgggtgtctgacttactgtattacttcagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 catatgaaaggaaaaatacttttgtcattgggtgtctgacttactgtattacttcagaag 743
Query: 61 atgacccccacttatattcatggtcatttcttaagagctcatttttttgttgcttctgtg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 742 atgacccccacttatattcatggtcatttcttaagagctca-ttttttgttgcttctgtg 684
Query: 121 atcaatccatgtttcattatgaaaatatgagatgcagaaaagaattggtattcctggaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atcaatccatgtttcattatgaaaatatgagatgcagaaaagaattggtattcctggaac 624
Query: 181 cataccaactaaagccttcaagaatgacctcctaatttcaaagacgaaaagcaaagacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cataccaactaaagccttcaagaatgacctcctaatttcaaagacgaaaagcaaagacaa 564
Query: 241 cttcaagatatataagccctattcttccttgttacattcaatttttcctagtgttccttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttcaagatatataagccctattcttccttgttacattcaatttttcctagtgttccttc 504
Query: 301 ccaatcagaacataatcatgccatcaccatgcctctttcttctaatgcatgctattattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccaatcagaacataatcatgccatcaccatgcctctttcttctaatgcatgctattattt 444
Query: 361 ttatttagaaatatatacgtttcatttctagcctattacaccactcatttttcatgaccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttatttagaaatatatacgtttcatttctagcctattacaccactcatttttcatgaccc 384
Query: 421 tgaaatggttctgctattctatgaaaggtttactcagtgtcctacatccaaccttctacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaaatggttctgctattctatgaaaggtttactcagtgtcctacatccaaccttctacc 324
Query: 481 cagctacaataattatgtcaacaatgttctcaaatacaccacctctgtatctcacaaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagctacaataattatgtcaacaatgttctcaaatacaccacctctgtatctcacaaaat 264
Query: 541 ctcaaaaaatctctttaaatatgtgtccgacttttctaaatagccagaaatgaaagacgt 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctc-aaaaatctctttaaatatgtgtccgacttttctaaatagccagaaatgaaagacgt 205
Query: 601 agat 604
||||
Sbjct: 204 agat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1002
Length adjustment: 10
Effective length of query: 594
Effective length of database: 992
Effective search space: 589248
Effective search space used: 589248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
