MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-175B23
Chromosome	3 (Build37)
Map Location	113,905,211 - 113,905,446
singlet/doublet	singlet
Overlap gene	Col11a1
Upstream gene	OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream gene	LOC100043220, Olfm3
Link	Open Mouse BAC browser

Click to get alignment info.

name	OTTMUSG00000022462 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545562 MGI:3705852
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1718 ESTs, 21 Proteins

name	LOC668723 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 16 Proteins pseudo : _no_value

name	Amy2-2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109959 MGI:104547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amy2-1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109960 MGI:104548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043684 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043684
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2328 ESTs, 22 Proteins

name	LOC100043686 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043686
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2327 ESTs, 23 Proteins

name	LOC100043688 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043688
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2325 ESTs, 23 Proteins

name	LOC100043207 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043207
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 846 ESTs, 16 Proteins pseudo : _no_value

name	Amy1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11722 MGI:88019
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnpc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67225 MGI:1914475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Col11a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12814 MGI:88446
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043220 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Olfm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229759 MGI:2387329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	OTTMUSG00000022462 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251447 GeneID:545562 MGI:3705852
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1718 ESTs, 21 Proteins product : predicted gene, OTTMUSG00000022462 transcript_id : XM_001481336.1

name	Amy2-2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356897 GeneID:109959 MGI:104547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amylase 2-2, pancreatic transcript_id : NM_001042711.2

name	Amy2-1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111607470 GeneID:109960 MGI:104548
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amylase 2-1, pancreatic transcript_id : NM_001042712.1

name	LOC100043684 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251449 GeneID:100043684
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2328 ESTs, 22 Proteins product : similar to Amylase 2, pancreatic transcript_id : XM_001480957.1

name	LOC100043686 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251451 GeneID:100043686
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2327 ESTs, 23 Proteins product : similar to Amylase 2, pancreatic transcript_id : XM_001480959.1

name	LOC100043688 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251453 GeneID:100043688
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2325 ESTs, 23 Proteins product : similar to Amylase 2, pancreatic transcript_id : XM_001480963.1

name	Amy1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6996908 GeneID:11722 MGI:88019
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amylase 1, salivary transcript_id : NM_007446.1

name	Rnpc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84662759 GeneID:67225 MGI:1914475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA-binding region (RNP1, RRM) containing 3 transcript_id : NM_026043.3

name	Rnpc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84662757 GeneID:67225 MGI:1914475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA-binding region (RNP1, RRM) containing 3 transcript_id : NM_001038696.1

name	Col11a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487345 GeneID:12814 MGI:88446
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type XI, alpha 1 transcript_id : NM_007729.2

name	Olfm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892898 GeneID:229759 MGI:2387329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactomedin 3 transcript_id : NM_153458.2

name	Olfm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892210 GeneID:229759 MGI:2387329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactomedin 3 transcript_id : NM_153157.2

name	OTTMUSG00000022462 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251448 GeneID:545562 MGI:3705852
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to amylase 2, pancreatic protein_id : XP_001481386.1 transl_except : (pos:complement(112955011..112955013),aa:OTHER) transl_except : (pos:complement(112954939..112954941),aa:OTHER) transl_except : (pos:complement(112954139..112954141),aa:OTHER) transl_except : (pos:complement(112953972..112953974),aa:OTHER) transl_except : (pos:complement(112952634..112952636),aa:OTHER) transl_except : (pos:complement(112952622..112952624),aa:OTHER) transl_except : (pos:complement(112952559..112952561),aa:OTHER) transl_except : (pos:complement(112952423..112952425),aa:OTHER) transl_except : (pos:complement(112952372..112952374),aa:OTHER) transl_except : (pos:complement(112950697..112950699),aa:OTHER)

name	Amy2-1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111607471 GeneID:109960 MGI:104548
definition	GO_function : GO:0004556 - alpha-amylase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 product : amylase 2-1, pancreatic protein_id : NP_001036177.1

name	Amy2-2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111607467 GeneID:109959 MGI:104547
definition	GO_function : GO:0004556 - alpha-amylase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 product : amylase 2-2, pancreatic protein_id : NP_001036176.1

name	LOC100043684 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251450 GeneID:100043684
definition	codon_start : 1 product : similar to Amylase 2, pancreatic protein_id : XP_001481007.1

name	LOC100043686 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251452 GeneID:100043686
definition	codon_start : 1 product : similar to Amylase 2, pancreatic protein_id : XP_001481009.1

name	LOC100043688 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251454 GeneID:100043688
definition	codon_start : 1 product : similar to Amylase 2, pancreatic protein_id : XP_001481013.1

name	Amy1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6996909 CCDS:CCDS17776.1 GeneID:11722 MGI:88019
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0004556 - alpha-amylase activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : amylase 1, salivary protein_id : NP_031472.1

name	Rnpc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84662758 CCDS:CCDS17777.1 GeneID:67225 MGI:1914475
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : RNA-binding region (RNP1, RRM) containing 3 protein_id : NP_001033785.1

name	Rnpc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981077 CCDS:CCDS17777.1 GeneID:67225 MGI:1914475
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : RNA-binding region (RNP1, RRM) containing 3 protein_id : NP_080319.2

name	Col11a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487346 CCDS:CCDS17778.1 GeneID:12814 MGI:88446
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0001502 - cartilage condensation [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0006029 - proteoglycan metabolism [Evidence IMP] codon_start : 1 note : pro-alpha1(XI) collagen; chondrodysplasia; a1(XI) collagen product : procollagen, type XI, alpha 1 protein_id : NP_031755.2

name	Olfm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23618873 CCDS:CCDS17779.1 GeneID:229759 MGI:2387329
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform A is encoded by transcript variant A; optimedin product : olfactomedin 3 isoform A protein_id : NP_703188.1

name	Olfm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346605 CCDS:CCDS17780.1 GeneID:229759 MGI:2387329
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform B is encoded by transcript variant B; optimedin product : olfactomedin 3 isoform B protein_id : NP_694797.1

name	LOC100043220 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043220
definition	number : 1 pseudo : _no_value

name	LOC668723 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251373 GeneID:668723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 16 Proteins product : similar to pancreatic alpha-amylase pseudo : _no_value transcript_id : XR_034359.1

name	LOC100043207 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251374 GeneID:100043207
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 846 ESTs, 16 Proteins product : similar to amylase 2-2, pancreatic pseudo : _no_value transcript_id : XR_034362.1

clone name	MSMg01-156B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545D23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-263A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103E15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-493E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046P11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-048E03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-263A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299D18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-180C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323B18
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-175B23.T7 (MSMg01no175_b23.b1)	MSMg01-175B23.TJ (MSMg01no175_b23.g1)
ACC	AG370208	AG370209
length	712	745
length of high quality (start - end)	235 (122 - 356)	278 (70 - 347)
definition	CHROMAT_FILE: MSMg01no175_b23.b1 PHD_FILE: MSMg01no175_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:08 2005	CHROMAT_FILE: MSMg01no175_b23.g1 PHD_FILE: MSMg01no175_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:08 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCXXXXXXXXXXXXXXXXXXXXXXXXXXCTANATCGNGACCTGCGCGGAA TTAAATCCATTCCTAAAAATGAAGCCCAACATTCTTTTAGAATATCATGC TGAGCTTCTCAGAGTGATCCCAACCACCAAGGGCAATGCAATTTGTGTTA AAGAATGGCAAGCCAATTTGACAAACCATTGAAGGTGAGCTTCAAAGGAA GTGCACTGAACTAGATTCCAAAGTTTTAAAGATAGAAAAGCTCCTGCATA TCAGAAAGGAAAATGAATGAAAACACATCCATTATAACAATTGACTGGAC ATAATTAAGGAATATTTATTATGTTTGAACTTCTTGTGAGCCAGAAATGG TTTTAGTTTATTATACCACAGGATTTTGTCTGCAGCTCTATTTATGAATA TGATACTTGACTGCCCTTCTTTGTCTTAAAAGTTTATTGTGATTTAAATG CTTGCAAACTAAGGACTCTTGGAAAATGAAGTGGATGCATTTGGCTGGAG GATCATGGGTCCAATGGATCAATTAGGTTGCTGGATGGCAAAGTCAAGAG GATTGTCATGCTTCAGTCTAGCTATACATTTTTCTAAGCCATAAGTACTG CCACAGTTTTGGCAAAGATCAATTTAATATAATTTCTTTTTAGCAGCAAA AAAAGAAGACATGAGCTTAAAAACCTGTTTGGAGAATGCAAGGACTTGAC CTAAAGTTTGTA	AATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXAATATGAAAAGCAAAATATTATTTTTTGGGG ACATTAGCTCCTTACCTTCTTTGCTCTCTGACTGTCTGTTTTCCTTCCTT CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC TTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTTTCTTCTTTCCTTCCTTTCTCCCTTCTTTCTTTCTTTCCT TCTTTCTCTCTCTCTTCCTCTTTCTTTCTTTCTTTCCTTCTTTCTCTCTC ACTTCCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCATACTTACATTCTT TCATTCTTTCCACCATTCATGACTACTTTGAAAAATTTATCCTTTCTTTC CTTCTCTCATTCTTTTTACATCTCCCTCCCTCTATCCCTTCCTCAGACAA ACAGTGATGTTAACTAACTTCCCACCTTTCTTACTTCTTGAAATGAAAAA CTATCCTCTGAAGCGCAGGAATAAAAATCAAACATAATGAACATTCCTGT CCCCCCCCTCCTTACAAGTTTAACAAATCTTTGCCCCTAAAGGAATTTTC CTACATCTGTTTTATCTTTCTTACTTCATTAACCCCTTTCTCAAATTTTA TTTTACCTAACAATAACCTTTATCCCCTTAAGCAATACAAAAAAG
quality values	Open. Hide. 8 8 8 8 9 8 8 9 22 25 29 28 28 22 22 28 37 37 37 37 40 37 37 41 25 21 11 10 10 10 3 0 3 9 9 3 0 3 9 8 8 8 8 8 8 23 27 33 21 19 9 9 9 21 21 15 9 7 7 7 8 9 8 8 8 8 7 7 7 7 8 10 10 19 22 31 33 33 33 36 53 57 57 59 59 57 57 57 57 50 50 53 53 53 53 50 50 50 50 59 57 57 57 57 57 59 53 36 33 32 21 17 11 12 11 13 10 10 10 11 10 12 12 30 30 41 42 50 50 48 48 53 48 48 50 53 57 57 57 59 59 57 53 50 50 50 50 50 50 57 68 68 47 42 42 42 41 41 48 48 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 57 57 57 57 42 42 42 42 42 44 44 57 59 59 68 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 54 54 54 57 57 54 54 59 59 57 54 54 54 57 57 57 43 59 43 39 39 57 46 57 57 59 59 59 44 32 19 10 10 10 10 12 18 34 44 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 59 59 59 59 57 48 48 48 48 48 53 48 48 43 43 43 43 43 43 43 48 48 48 59 59 59 46 47 39 32 25 26 12 12 11 8 8 8 8 8 8 12 12 27 30 59 59 59 59 59 59 59 41 41 30 30 30 39 39 43 44 57 48 48 48 48 59 59 59 59 31 33 24 11 11 9 9 9 9 13 22 21 18 13 13 12 12 11 11 11 12 12 12 18 24 24 28 34 39 59 59 59 48 48 48 57 59 59 59 59 59 59 57 57 57 57 48 48 59 59 59 59 59 48 48 59 50 41 34 31 23 10 10 8 8 8 8 19 29 25 28 18 17 17 24 24 24 31 32 43 41 41 41 41 41 37 37 28 28 28 32 32 30 32 30 32 32 43 43 48 48 48 43 43 43 39 42 39 30 24 18 22 34 40 47 54 48 44 41 30 30 32 36 36 37 35 28 36 23 20 27 27 32 37 48 44 47 43 43 46 47 43 43 43 47 43 47 47 47 47 47 48 48 48 42 42 35 37 26 27 21 28 22 22 25 25 21 31 28 30 30 24 24 15 28 34 43 39 47 47 37 37 37 40 40 37 34 28 28 24 24 30 25 25 25 33 33 39 59 37 35 33 33 30 30 30 39 37 43 39 39 31 24 28 24 36 36 43 43 57 59 59 59 36 34 25 25 25 34 41 59 59 59 59 47 41 28 24 18 23 23 28 30 39 34 34 34 37 30 28 28 35 37 39 59 59 36 31 30 14 14 11 11 11 12 12 15 15 20 28 28 27 26 25 27 26 23 23 15 20 15 21 18 21 24 30 32 47 28 29 19 16 12 12 12 12 18 18 14 18 15 15 14 15 13 12 12 12 21 21 22 29 12 16 11 17 14 16 15 18 18 25 31 29 32 37 31 28 35 24 24 28 28 28 20 20 23 23 23 22 22 22 29 27 25 25 32 37 37 28 23 16 15 18 18 15 20 9 10 9 9	Open. Hide. 6 6 6 8 10 8 8 8 8 11 15 17 19 23 23 24 24 27 24 24 24 23 23 15 18 9 9 9 9 8 8 8 8 9 13 25 17 25 15 20 34 34 32 36 36 33 33 33 39 41 37 23 17 11 11 9 11 14 23 11 11 11 12 10 10 15 19 25 21 28 28 26 39 48 48 48 43 39 32 30 30 30 32 39 40 40 42 42 48 48 27 27 13 12 12 27 23 23 23 20 32 31 42 32 32 20 20 15 28 34 47 47 59 44 42 30 37 37 44 44 59 44 37 36 36 28 28 18 24 11 11 11 32 24 32 32 37 35 37 43 43 57 57 57 48 48 48 57 50 50 50 50 44 44 43 43 43 43 43 50 52 52 52 52 52 52 52 52 57 57 52 52 52 52 52 52 52 52 52 57 57 57 57 57 52 52 52 59 52 52 52 57 43 39 39 57 57 52 52 52 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 52 52 52 43 42 35 35 39 43 42 42 43 44 44 44 35 35 35 27 27 43 44 57 57 57 59 59 43 39 39 35 33 31 31 43 44 43 39 35 35 35 42 38 43 32 37 37 43 43 43 43 33 27 27 43 43 43 38 33 27 29 29 38 43 33 35 35 35 33 33 33 32 32 23 23 23 43 28 32 32 32 32 33 33 35 35 35 50 50 43 43 22 18 18 18 28 34 28 28 28 33 41 41 41 31 27 32 26 32 13 18 18 28 32 36 43 43 36 37 25 25 25 28 28 36 36 23 23 23 18 19 12 15 15 28 23 12 12 11 16 16 28 14 14 14 28 26 28 28 23 23 23 23 18 18 12 11 11 16 22 27 23 18 18 11 12 10 10 10 10 10 11 12 10 9 9 9 9 9 12 21 18 19 11 11 10 11 11 19 16 15 11 10 10 10 10 10 12 22 11 11 11 11 9 8 8 8 8 8 11 16 12 10 10 12 21 18 18 23 23 17 19 10 10 10 17 19 25 25 24 23 21 19 20 20 20 24 10 8 8 8 8 10 10 13 14 22 12 12 12 12 12 12 12 15 22 19 25 23 24 26 26 19 15 20 13 13 9 11 12 12 12 20 20 24 22 19 8 8 7 7 7 6 10 8 8 8 8 8 10 10 9 9 9 8 8 8 11 10 10 19 24 13 13 8 8 8 8 12 15 19 22 21 11 11 11 17 15 14 10 10 10 10 10 18 11 10 10 8 10 8 8 8 8 9 11 11 11 16 10 8 6 6 8 8 9 10 10 19 15 15 10 10 10 11 19 12 15 10 17 15 15 17 8 8 8 10 9 9 12 10 8 8 8 10 11 12 12 12 12 21 15 15 13 9 11 11 14 14 18 25 20 15 11 8 8 8 8 8 8 9 13 13 9 9 8 8 8 8 9 9 9 15 12 10 10 8 8 10 10 9 9 10 10 10 8 8 8 10 10 13 10 10 10 10 10 9 9 9 9 9 9 10 13 10 11 11 12 16 18 11 11 10 11 11 13 13 15 12 12 12 8 6 7 7 10 10 13 10 10 9 9 10 8 8 8 12 12 16 16 11 11 11 11 11 11 8 8 10 8 8 8 11 8 8 8 8 8 8 8 8 8 9 10 10 9 9 9 9 10 10 11 9 9 9 9 12 10 6 6 6 6 7 8 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no175_b23.b1 MSMg01no175_b23.b1 CHROMAT_FILE:
MSMg01no175_b23.b1 PHD_FILE: MSMg01no175_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:08 2005
         (235 letters)



>mm_chr3_113905011_113905646
          Length = 636

 Score =  404 bits (209), Expect = e-117
 Identities = 229/241 (95%), Gaps = 11/241 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccaccaagggcaatgcaatttgtgttaaagaatggcaagccaatttgacaaaccattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaccaccaagggcaatgcaatttgtgttaaagaatggcaagccaatttgacaaaccattg 377

                                                                       
Query: 61  aaggtgagcttcaaaggaagtgcactgaactagattccaaagttttaaagatagaaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaggtgagcttcaaaggaagtgcactgaactagattccaaagttttaaagatagaaaagc 317

                                                                       
Query: 121 tcctgcatatcagaaaggaaaatgaatgaaaacacatccattataacaattgactggaca 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcctgcatagcagaaaggaaaatgaatgaaaacacatccattataacaattgactggaca 257

                                                                       
Query: 181 taattaaggaat------atttattatgtttgaacttcttgtgagccagaaatggtttta 234
           ||||||||||||      |   |  |||||||||||||||||||||||||||||||||||
Sbjct: 256 taattaaggaataaaaaga---a--atgtttgaacttcttgtgagccagaaatggtttta 202

            
Query: 235 g 235
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space:   141702
Effective search space used:   141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information