Query= MSMg01no175_l05.b1 MSMg01no175_l05.b1 CHROMAT_FILE:
MSMg01no175_l05.b1 PHD_FILE: MSMg01no175_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:50 2005
(248 letters)
>mm_chr3_116088927_116089575
Length = 649
Score = 398 bits (206), Expect = e-115
Identities = 239/252 (94%), Gaps = 7/252 (2%)
Strand = Plus / Plus
Query: 1 atgcctatggcacacttttcacagttatctattgcttgtgtgctctc--t-ttctctgaa 57
||||||||||||||||||| |||||||||||||||||||||||||| | || ||||
Sbjct: 201 atgcctatggcacactttttgcagttatctattgcttgtgtgctctccatatt---tgaa 257
Query: 58 gctggatttgtttgtttgcttgtttgtttatatcctttaggactcaccatggttcacagg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gctggatttgtttgtttgcttgtttgtttatatcctttaggactcaccatggttcacagg 317
Query: 118 agctaaataaatatatactaaagtaatcaagacctgactacgcatcccacaagagagatg 177
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 agctaaataaatatatactaaagtaatcaagacctgactacgcatctcacaagagagatg 377
Query: 178 cccatgcggtttaaatagatcct-cctctaaacaggaaaatcacatcgtaggagaaaaaa 236
||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 378 cccatgccgtttaaatagattcttcctctaaacaggaaaatcacatcataggagaaaaaa 437
Query: 237 atatggaaagag 248
||||||||||||
Sbjct: 438 atatggaaagag 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space: 152960
Effective search space used: 152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no175_l05.g1 MSMg01no175_l05.g1 CHROMAT_FILE:
MSMg01no175_l05.g1 PHD_FILE: MSMg01no175_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:50 2005
(290 letters)
>mm_chr3_116211825_116212514
Length = 690
Score = 530 bits (274), Expect = e-155
Identities = 283/290 (97%), Gaps = 7/290 (2%)
Strand = Plus / Minus
Query: 1 cagtcacagggaattcgataccctcttcaggcctctgtggcctgtgtacagatgaatgtg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 524 cagtcacagggaattcgataccctcttcaggcct-------ctgtgtacagatgaatgtg 472
Query: 61 tacacattatgcccattcacataataataatttttaaaaagtacaacatgtatattcgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tacacattatgcccattcacataataataatttttaaaaagtacaacatgtatattcgca 412
Query: 121 cagcagccttgcttcaatgtcttattatttcctgtctgtaaaattatatcactggtatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cagcagccttgcttcaatgtcttattatttcctgtctgtaaaattatatcactggtatct 352
Query: 181 cctttttttaggttcttaggccgctaaaccatcttctgtacactataatgggtttgtgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cctttttttaggttcttaggccgctaaaccatcttctgtacactataatgggtttgtgcc 292
Query: 241 tctccctttggtttagcggaccatgagacaaggaagtttctctgagtctc 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tctccctttggtttagcggaccatgagacaaggaagtttctctgagtctc 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
