BAC Information

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BAC

Clone NameMSMg01-175N22
Chromosome3 (Build37)
Map Location 13,947,279 - 13,947,434
singlet/doubletsinglet
Overlap gene0710005M24Rik
Upstream geneLOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175N22.T7 (MSMg01no175_n22.b1)MSMg01-175N22.TJ (MSMg01no175_n22.g1)
ACCAG370734AG370735
length679694
length of high quality
(start - end)
289 (62 - 350)156 (467 - 622)
definitionCHROMAT_FILE: MSMg01no175_n22.b1 PHD_FILE: MSMg01no175_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:02 2005CHROMAT_FILE: MSMg01no175_n22.g1 PHD_FILE: MSMg01no175_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
TCTGAGGACAACAGAATGGCTGAGAAGCACCTGAAAAAAATGTTCAACAT
CCTTAATCATCAGGAAATGCAAATCAAAACAACCTTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGG
ACATAGTAATAACAGAGGATCCCACAATACCTCTCCTGGGCATATATTTT
GTTTATGTTCCAACTGGTAGGAAGGAAACATGCTCCACTATGTTCATAGC
AGCCTTATATCTAAGAGCCAGGAGCTGGAAAGAACCCAGATCCCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGCACATTTACACAATGGAGTACTAC
TCAGCTATTAAAAATAATGAATTTATGAAATTCCTAGGCAAATGGATGGA
CCTGGAGGGCATCATCCTGATTGAGGTAACCCAATCACAAAAGAATTCAC
AAGATATGTACTCACTGATAAGTGGGTATTAGCCCAGAAACTTAGAATAC
CCCAGATATAAGATACAATTTGCAATACT
CCCAAAAAGNCCCCCCCAACGATGAAGTGGGAGGCCTGGCGGCCGCCTGG
TTTCAGACTAGGAGGNNGAACNANAGAATTTCCCAAAAAAAGCAGNGNAA
AACTNCAATNCNTGCCTCCAGCTTCAATTATTTTATCCCAAGGAAAATAA
AGNAGNCCAGAAGGGAGGAGGGATACTTAATTGGGAATGACAAGGNGAAT
ATTTAACAGGGTATGTCCTGCCAAACTTCTCAGTCCAGAGCATATTTGTA
AAATAATTCGCTGTGGACACCATTTCAAAAGGTTAAAAGGAGTCATTTGG
AATCCTCCCTAAGGAGCCCATTCTCAGTTGTTTTTTTTGAAGCTAAGNCN
ACAACATAGAGGATTATGAAGTTTTTTTTTCAGGACCACCCCCCCCCCAA
AGANTGANAANAAAANTGGNGGGGGNAAGGNAAAAAAACNCATGNGAAAA
CTTCTCAGTGGCGGGTTTCCCTAGAAAGTCAAACTTTCTCGCTTTATCTT
TTCTGTTGTGAAAAGTAAATATAACCAGTGAGCTCCAAATGGCCTATCAC
TAACTGTGTTTACCATTTCACTCCGGTATTGGCATTTTATTCTTTACTCA
AATATGTGCTTTCTCACTCTTCAATACAGTGAATTTAGACGTTGGTAGAG
AATAATTTCAGAAGCAGAAAGATTATGAGCAGCAGTTCCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_n22.g1 MSMg01no175_n22.g1 CHROMAT_FILE:
MSMg01no175_n22.g1 PHD_FILE: MSMg01no175_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:02 2005
         (156 letters)



>mm_chr3_13947079_13947634
          Length = 556

 Score =  279 bits (144), Expect = 8e-80
 Identities = 153/156 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccctagaaagtcaaactttctcgctttatcttttctgttgtgaaaagtaaatataacc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccctagtaagtcaaactttctcgctttatcttttctgttgtgaaaagtaaatataacc 260

                                                                       
Query: 61  agtgagctccaaatggcctatcactaactgtgtttaccatttcactccggtattggcatt 120
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 261 agtgagctccaaatggcctatcactaactgtgtttaccatttcacttcagtattggcatt 320

                                               
Query: 121 ttattctttactcaaatatgtgctttctcactcttc 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattctttactcaaatatgtgctttctcactcttc 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)