Query= MSMg01no176_f19.b1 MSMg01no176_f19.b1 CHROMAT_FILE:
MSMg01no176_f19.b1 PHD_FILE: MSMg01no176_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:01 2005
(457 letters)
>mm_chr3_63681901_63682757
Length = 857
Score = 832 bits (430), Expect = 0.0
Identities = 455/472 (96%), Gaps = 15/472 (3%)
Strand = Plus / Minus
Query: 1 tgcattttaatttctgcctagatccttgtgtcctgttcctgtttttagcaatttgaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tgcattttaatttctgcctagatccttgtgtcctgttcctgtttttagcaatttgaaggc 724
Query: 61 atgagccagtgag-------------gttt--ttttgttttgttttgttttgttttgttt 105
||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 723 atgagccagtgaggttgttttgttttgttttgttttgttttgttttgttttgttttgttt 664
Query: 106 tgttttacgatgaggcctggctagtaaccttgcctttgtagagcacacttactcaaattt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgttttacgatgaggcctggctagtaaccttgcctttgtagagcacacttactcaaattt 604
Query: 166 cattttaaaactgcatttcatcatctcatacggaaagaactcacacttcgcacgtttcca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cattttaaaactgcatttcatcatctcatacggaaagaactcacacttcgcacgtttcca 544
Query: 226 ttccattccatgtactctagagacacttggctggaggcataaatatacatttaaaaaaca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttccattccatgtactctagagacacttggctggaggcataaatatacatttaaaaaaca 484
Query: 286 tttaacattgtatgtaaccagttccttccctctcttcttggtctgtggtgagatggggac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agtaacattgtatgtaaccagttccttccctctcttcttggtctgtggtgagatggggac 424
Query: 346 aacaggagaggttggaaaagtcgatgtgttgagtgtcatcagtaaggagaccctaagctc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aacaggagaggttggaaaagtcgatgtgttgagtgtcatcagtaaggagaccctaagctc 364
Query: 406 tttctacagggacatagggtatcagccaacagtaacgctgggacttctggga 457
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttctacagggacatagggtatcagccaacagtaacgctgggacttctggga 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_f19.g1 MSMg01no176_f19.g1 CHROMAT_FILE:
MSMg01no176_f19.g1 PHD_FILE: MSMg01no176_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:01 2005
(277 letters)
>mm_chr3_63623804_63624484
Length = 681
Score = 503 bits (260), Expect = e-147
Identities = 274/280 (97%), Gaps = 4/280 (1%)
Strand = Plus / Plus
Query: 2 tttctctacataaactgtcttccatgctaactttgttccttttatcccactcctacaccc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 202 tttctctacataaactgtcttccatgctaactttgttccttttatcccactcccacaccc 261
Query: 62 cactttttaaaaagtattcaagctttttaagtaaacaggagatcagaactggatgcagag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cactttttaaaaagtattcaagctttttaagtaaacaggagatcagaactggatgcagag 321
Query: 122 aacagacctacgacccttattctctggttc---gaa-taaagcttcaggtgacaaaaaca 177
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 322 aacagacctacgacccttattctctggttctaggaaataaagcttcaggtgacaaaaaca 381
Query: 178 aactgctgtgataaggtatcccaggcaacagacaccaaacagaacacacatatacatcct 237
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aactgctctgataaggtatcccaggcaacagacaccaaacagaacacacatatacatcct 441
Query: 238 ccacccaaactgtcgggcagtgtgaggcattcatgtagag 277
||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccacccaaactgtcgggcagtgtgaggcattcatgtagag 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 681
Length adjustment: 9
Effective length of query: 268
Effective length of database: 672
Effective search space: 180096
Effective search space used: 180096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
