Query= MSMg01no176_h06.b1 MSMg01no176_h06.b1 CHROMAT_FILE:
MSMg01no176_h06.b1 PHD_FILE: MSMg01no176_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:13 2005
(421 letters)
>mm_chr3_114843426_114844246
Length = 821
Score = 721 bits (373), Expect = 0.0
Identities = 400/411 (97%), Gaps = 8/411 (1%)
Strand = Plus / Plus
Query: 15 ggaatt-actattttatctcattttctgttatggtagtcatttggaataaaattttgtac 73
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 209 ggaattcactattttatctcattttctggtatggtagtcatttggaataaaattttgtac 268
Query: 74 agttttctatcattttttattcaaacatgttttaaacagcatatttttctttttcttttt 133
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agttttctatca-tttttattcaaacatgttttaaacagcatatttttctttttcttttt 327
Query: 134 ctttt-cttttcttttcttttcttttctcttct---ctt--ctcttctttattttttaaa 187
||||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 328 ctttttcttttcttttcttttcttttcttttcttttcttttctcttctttattttttaaa 387
Query: 188 atagaattagatagcctaatctcaggaagcaagcctatttgcttttaattaagaaatgaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atagaattagatagcctaatctcaggaagcaagcctatttgcttttaattaagaaatgaa 447
Query: 248 ttgtacatcaaattttcatgggaagttttctgaatctctacctaatcttcttttaatgaa 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttgtacatcaaattttcatgggaagttttctgaatctctacctaatcttcttttaatgaa 507
Query: 308 atggaccaatgactgctctgtttgcattagtcacagtacatgttgtatatgaatttgagt 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atggaccaatgactgctctgtttgcattagtcacagtacatgttgtatatgaatttgagg 567
Query: 368 aatgtactgagaaaacaacattaaaatataccaacaagtgttcattatcca 418
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aatgtactgagaaaacaacattaaaatataccaacaagtgttcattatcca 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_h06.g1 MSMg01no176_h06.g1 CHROMAT_FILE:
MSMg01no176_h06.g1 PHD_FILE: MSMg01no176_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:13 2005
(708 letters)
>mm_chr3_114997700_114998808
Length = 1109
Score = 1116 bits (577), Expect = 0.0
Identities = 613/625 (98%), Gaps = 1/625 (0%)
Strand = Plus / Minus
Query: 1 tccctttgcttcttagtttattttgataaacatcatgaagacacatatcattgataaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccctttgcttcttagtttattttgataaacatcatgaagacacatatcattgataaacc 566
Query: 61 cagactctagtgagattacagataactatatgcaggggagaaaaactagtcatgaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagactctagtgagattacagataactatatgcaggggagaaaaactagtcatgaaattt 506
Query: 121 tattgacagtagactga-ttgcaagagagatatgagtccttttaggagatgggagagaca 179
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 tattgacagtagactgatttgcaagagagatatgagttcttttaggagatgggagagaca 446
Query: 180 aataactcacagtgggtaaagagggatttgatgtttgaccttcaaaacacatgctgacat 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 aataactcacagtgggtaaagagggatttgatgttttaccttcaaaacacatgctgacat 386
Query: 240 ttgatcattaacctggtagtgagaccctcaggagataattaggtgattgatatgagcaaa 299
||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 385 ttgatcattgacctggtagtgaggccctcaggagataattaggtgaatgatatgagcaaa 326
Query: 300 tttatgaagggactgaagagtattcagtaggccttgttttctttgatatcttccacattg 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tttatgaagggactgaagagtattcagtaggccttgtttcctttgatatcttccacattg 266
Query: 360 taacatctcatatttagcccccgtggaagatgccatccaggaatcagagacttctcattc 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 taacatctcatatttagcccccgtggaagatgctatccaggaatcagagacttctcattc 206
Query: 420 tgcagccatgactgctagtagtaactttagaggtaccaaaagaaataatatctggcagat 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 tgcagccatgactgctagtagtaaccttagaggtaccaaaagaaataatatctggcagat 146
Query: 480 gagtgttttcctcttttcagaatttggaaaaaatggtatataactatactattaactcat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gagtgttttcctcttttcagaatttggaaaaaatggtatataactatactattaactcat 86
Query: 540 attcagggtttcaatgggcaactgttctgaaaacgctgattgcataattacacatttatt 599
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 85 atttggggtttcaatgggcaactgttctgaaaacactgattgcataattacacatttatt 26
Query: 600 ggaaataatagcaattatggggtta 624
|||||||||||||||||||||||||
Sbjct: 25 ggaaataatagcaattatggggtta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1109
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1099
Effective search space: 767102
Effective search space used: 767102
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
