BAC Information

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BAC

Clone NameMSMg01-176L07
Chromosome3 (Build37)
Map Location 112,380,005 - 112,380,620
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176L07.T7 (MSMg01no176_l07.b1)MSMg01-176L07.TJ (MSMg01no176_l07.g1)
ACCAG371324AG371325
length1,2881,278
length of high quality
(start - end)		715 (127 - 841)383 (70 - 452)
definitionCHROMAT_FILE: MSMg01no176_l07.b1 PHD_FILE: MSMg01no176_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:47 2005CHROMAT_FILE: MSMg01no176_l07.g1 PHD_FILE: MSMg01no176_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTTTCNNNNNNNCACAATGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCAGAGTCTTTCTTCCATGCCCTTTATAAGAAATTATACCTG
GCAAGAATTTCTTCTAGTCTACGATTTTCAAGCACTCTCTTGTAATGAGC
TTCTTTTCTAAGTTACTTGGAGTAGAAATTTTATCTCTCCTGCAAGGCCT
TGTCATACTGCCTCTGGTATGGTACTCTCTCTCTTCCAATACTCTAGCAA
TTATGGCCCAAACACAATCACCCATGGTCTAAAGGCACTCTCTCCTAACT
AATCTCATATGACAGGCAATTCTATATCTACTCCTTTCAAATGTCATCTT
GTTGCATTTGACCTAAATATTCATTATAATCATTTAATATAAGTTAATCG
ACGTAATACAAAAACTATAAGAACTAAGCAATGTTAACAGGCTACAAAAA
TCTGTTCTAAACATGCTCAGAGTGCATGCCCCCAAATACATTAATCTTGT
GTTAATACATTCATCATTGTGAATTACCAAAATTTTAATTTGTAAAATAA
AATAATAAATAAAATATTTTTTAAAAAATTATAATAAAATAAGGTAAAAC
TTTAAGGCAATTTAAAAAAAATGTTTGAAAAACCATTCATGTAGCAGATA
TGTAAAATATGTATGTGCTCTCTAAATGTAACAGTTTTTTCTGCTATACA
CAAGAAAAAAATGAAAATGAATTCACTGTAGAATGGAAAAAGCATTCATT
TAAATATCATTCCAAATCTCATTGAAGTTTAGGTTTTGGGACATCTTCTC
TCAATAGGACTTTTAACTTCAATTTTCTCTCATTGTTGAGAAAAATATTT
AACCTCAAAGTGGAAATACTGTCTTTGAAATGCAAATTTTATCATGTTGT
TCTCTATAATCTGGTATCCATTCCCTTANAATGCNAATTTAGAACATCAT
ACATTAGGGGATAAAAGCGATTACTGGTAATTGGACAATTAAATAATCCT
TAAAGTCTCACACCCTCTTCCCAAATTTTTAAAAAAAACTTGGTCATACA
TGTTCCCGTGCCCCAACCAAATTTGAATTCAAAATTTCATTCAACCTAAA
ATTTTTGTTGGAAAAATATGAACTTTCCTAAAAATTTTTATAATAGTTAT
GGGTTTCCAAAATTTTGTTAAACGTTTTTTATTTTTCTAAACAGGGTGTT
TCTGCCTTTTTAAATTATCTCAAAAAATAACACTATTCTGGTTCTTGAAA
ATTAAAAAAAAACTCCCCCTTATTTAAAATTGGTGTAC

NNCCCCTCACGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGATCAAGGCTCAAATGTTTAATGGCGGACA
TGCTTTATAAAGGCGGGGGGATGCCTTTTCCCGACAATTCATCCTTGGAG
CCCAGCTGCAGGTGACCATGTGCAGGATAGGATGAAGTCTCTGGAATAGC
TAGGCCTACTCCCAGAAGGTAGCAGCAGGGACAGTGGCTGAACAATAGAG
TGATCTAGGTAGGCAGGCTCCACCCAAGGGAATGTTCTTAGTGGCAGCAA
AGTCTAGGTCTGGTTCAGCCAGCTTCAGGCTGGGTGGAGGTCACAGCATA
TGCTGCCTGGTTGGTGTTCCAATGTCTGAAAGATCTACGGGGTCCAGGTT
ATTTGAGACTTTTGGTCTTCCTACAGGATTGCCCTCATCCACCTCAGCTT
CTTCTTTTTTCCCCCCCCCTCAACCACAGAGGTCAGCAGCTAAAGAAGAT
GGGTTGGGTGCAAATAAGTGCATCTGACTCTTTCAGCTGCTTGTTGGGTC
TTTCAGGGGGCAATCATAATTGTCCCTTTTTATGAGCACTCCATAGCCTC
CATAATAGTGTCAGGCATTGGAGCCTCCTCTTGAGCTGGATTTCACTTTG
GGCCGGTTGTAGGATCTCCTTTTCCTCAGGCTCCTCTCCATTTCCATCCC
TGCAGTTCTTTTAGTCAGGAACAATTATGGGTCAGAGTTTTGACTGTGTG
GTTTCAACCCCATTCCTCACTTGTTGTCCTGTCTTTTTGCTGGAGGTGGG
CTCCTACAGTTTCCTCTCCCTCCCCACTGTATGACTTTTCTTCTAAGGTT
CCCTCTCTTTGAATCTGACAGTTTCTCACCCCCCAAGTCTCCGGTACATT
TTGACAGGTCTTCCCAATCTTCCTACTTCCTAAGAATGCCCTGTTCCATT
CTTTCGCTGGCCCTCGGAGATCCCGTCTTTTCTTCCTCCATTACCAAATT
TGTGTCCCTTTTTCCCTTTTTCTCCCCTTGGCTCCTTTTTCTCTAATTTC
CTTCCCTCTTACCCCCTTATTTGTAGTTTTTTTTTACTTTTTTCAATTTC
TACATACATCATTTACTGTTTTTTTTTTCCTCATAATTCTCCCTTTCTCA
ATTTTCACCGTTCTCTTTATATTCGTTATTCTAATTTCTCTTTTCCTTTA
TCTTTTGTCATCTCTTCTCTTCCTATCTTTCTATGATTGCTTGACTTCCT
ACTGTTCTTACATCTTTCTTTTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_l07.b1 MSMg01no176_l07.b1 CHROMAT_FILE:
MSMg01no176_l07.b1 PHD_FILE: MSMg01no176_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:47 2005
         (715 letters)



>mm_chr3_112380005_112381119
          Length = 1115

 Score = 1118 bits (578), Expect = 0.0
 Identities = 606/616 (98%), Gaps = 2/616 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaagcactctcttgtaatgagcttcttttctaagttacttggagtagaaattttatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttcaagcactctcttgtaatgagcttcttttctaagttacttggagtagaaattttatct 557

                                                                       
Query: 61  ctcctgcaaggccttgtcatactgcctctggtatggtactctctctcttccaatactcta 120
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cttcagcaaggccttgtcatactgcctctggtatggtactctctctcttccaatactcta 497

                                                                       
Query: 121 gcaattatggcccaaacacaatcacccatggtctaaaggcactctctcctaactaatctc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 496 gcaattatggcccaaacacaatcacccatggtctaacggcactctctcctaactaatctc 437

                                                                       
Query: 181 atatgacaggcaattctatatctactcctttcaaatgtcatcttgttgcatttgacctaa 240
           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atatgacagggaattctatttctactcctttcaaatgtcatcttgttgcatttgacctaa 377

                                                                       
Query: 241 atattcattataatcatttaatataagttaatcgacgtaatacaaaaactataagaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 376 atattcattataatcatttaatataagttaatcgacgtaatacaaaaacaataagaacta 317

                                                                       
Query: 301 agcaatgttaacaggctacaaaaatctgttctaaacatgctcagagtgcatgcccccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agcaatgttaacaggctacaaaaatctgttctaaacatgctcagagtgcatgcccccaaa 257

                                                                       
Query: 361 tacattaatcttgtgttaatacattcatcattgtgaattaccaaaattttaatttgtaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tacattaatcttgtgttaatacattcatcattgtgaattaccaaaattttaatttgtaaa 197

                                                                       
Query: 421 ataaaataataaataaaatattttttaaaaaattataataaaataaggtaaaactttaag 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 196 ataaaataataaataaaatattttttaaaaaaatataataaaataaggtaaaactttaag 137

                                                                       
Query: 481 gcaattt--aaaaaaaatgtttgaaaaaccattcatgtagcagatatgtaaaatatgtat 538
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gcaatttttaaaaaaaatgtttgaaaaaccattcatgtagcagatatgtaaaatatgtat 77

                                                                       
Query: 539 gtgctctctaaatgtaacagttttttctgctatacacaagaaaaaaatgaaaatgaattc 598
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  gtggtctctaaatgtaacagttttttctgctatacacaagaaaaaaatgaaaatgaattc 17

                           
Query: 599 actgtagaatggaaaa 614
           ||||||||||||||||
Sbjct: 16  actgtagaatggaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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