BAC Information

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BAC

Clone NameMSMg01-176M22
Chromosome3 (Build37)
Map Location 85,865,531 - 85,866,134
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019
Downstream geneSh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176M22.T7 (MSMg01no176_m22.b1)MSMg01-176M22.TJ (MSMg01no176_m22.g1)
ACCAG371394AG371395
length1,2111,234
length of high quality
(start - end)
660 (128 - 787)604 (131 - 734)
definitionCHROMAT_FILE: MSMg01no176_m22.b1 PHD_FILE: MSMg01no176_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:01 2005CHROMAT_FILE: MSMg01no176_m22.g1 PHD_FILE: MSMg01no176_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATTCNNNNNAATCACTGGGCGNATAGACTCCTAAGGGAGAGGATCCG
CGGAATTCTTTGTTTAGCTTTGAGCCCTTTTTTTTCCTGGGGTTATCTGA
TTTTCTGGAGTACTACTCTGCTATTACAGAGAATGAATTTATAAAATTCC
TAGGCAAATGGATGGACCTGGAGGGTATCATTCTGAGTGAGGTAACCCAA
TCACAAAAGAACTCACATGATATATACTCACTGATAAGTGGCTATTAACC
CAGAAACTTAGAATACCCAAGTTACAAGTTGCAAAACACATGAAACTCAA
AAAGAATGAAGACCAAAGTGTGGTCACTTTGCCCCTTCTTAGAATTGGAA
ACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAACTGAGACG
AAAGGATGATTTATCTAGAGACTGCCGCACCTGGGGATCCTTCCCATAAT
CAGCCTCCAAATGCAGACACCATCGCATATGCCAGCAAGATTTTGCTGAA
AGGACCCTGATATAGGTGTCTCGTGTGATGCTATGCCAGTGCCTGGCAAA
CACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACACAGAACCCCC
AATGGAGGAGCTAGAGAAAGTACCTAAGGAGCTAAAGGGGTCTGCAACCC
TATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTC
TCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAG
AGAGGTCCCTTGGTATTGCAAACTTTTATATGCCCCAGTACAGGTGAATG
CCCGGGCCAAGAAGTGTGAGTGGGTGTCGAAATGTCTTATTTTTTNTTCT
CCCCTTACTTTTCTTTCTCCTCTTCTTCTTTTTTCTCTTTCTTTTTCCAT
TTTCTCTTTTCTTCTCTTTCTTTTTTCTTTTTTTTTTTTTTTTTTCTTTC
TCTTTTTTTCTCTCTTCTTCCTCTTCTTTTCTTCTCTCTCCTCTTCTTTT
CCTTTTTTCCTTTTTCTTCTTTCTTCTTCTTTTTTCTTTCTTCCTTTCTT
TCCTTCTACTTTTTTCTTTTTTTTCTTTCTTTCTCTTCTCTTAATCTCTA
TCCTATTTCTTCCTCTCCTCTCTTCTTCTTTTTCTCTTCTTTACTTCTTT
CTTCTTTTTCTTTTATCTCCTTTACCTCATTTTTTCTTTTCTTCCTTTCT
TCCTCTTCCAC
CCACTCTTNNNNNTATGAAGGCAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAAGATTCCAAAATAGTTA
CTCACTTGTGAGGCAGACCCTTAGGCAGGAGAATCTCTCTGAGTTTGAGG
CCGTCCTGGTCTATATAACAGTACCAGGCCAGCCAAGAATACATAGTGAA
CCCCTGTCTCAGAAACAATTATTGTATGTGTTAGCATTTTTCTAAGTAAT
GAGGTAATTCATACTAATTATTAAGACATGTGAAATTTAATTTTTAAAAA
AAAACTCCATAATAATTTTGTTGTGGCTGAATTATCTAAAATGCTACTGA
GAATTGGCAATCTTAGCCTACTGACCTTTTCTTCATTTCACTAATACTTC
CTTTTTTGTATTTCACAGACCCAGATATATATACCTTTACCTGAGTTTGA
GTGGTGAGCCTGCAAGTGGGTTGGCTTGACCCACTCCCCAAGATGGTTCT
GACCTCATTTGGGAAAATACGTTGGGATTTGACAAGGGGTTTAATATCCT
GAGGAACAACTTTGTCAGTCAGCTTTAAACATTCTTGTTACATTTATTTG
TGGAGAGGGCATATGCTACACCTGGCCGGAGTCTCGTCTCTCCTTCTACC
ATGTAGGTCCTAGGGATGGCTCTTAGGTCCCCCGGCTCGGCACATGCTCC
ATCTACTGCACTGTCTCCATGGCCCCATCACTCAGCCTGCAGTGAGCCGG
TGTCCTCACCTTTTTTTAGTACTTCCCTGTGAGGCTGCTATCACTGCTGG
CCTTCCTGTCTTGAAGGTCCCACCCAATTTTCTTCAGATCCTTGGTTTCT
TGAGTCATGGCTTGTGTGAGTAATGTCCACTTTTAAAGTTAAGCTTATGT
TCCTCACCCCACCATTCTCAGTTTGCATTTTGCCCTGCGATTGTCCCCCT
CAATATATTTCTTTTCCTGAAAAAATAAAAACCCAGCTGCCTTCTGAATT
TATTCTGGTGCACAACCGTACTCTCCTTTTATTTCTTGGTCTTAAATTTT
TTTCCCCCTTTTTTTCTTTGTTCTTCCCTCTTCTTTTTCTTTTACTTCCT
CTTCTTTTTCCCCCTCTAATTGCTTCTTTTTTCTCCCTCATTCTCTGTTC
TTTCTTTCCTGTTCCTTTTACTCAGCATTTATTTCTTCTTCTTCTTTATC
TTCATCTGTCTTCCCTTATCCCTCTTTCTCGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_m22.g1 MSMg01no176_m22.g1 CHROMAT_FILE:
MSMg01no176_m22.g1 PHD_FILE: MSMg01no176_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:01 2005
         (604 letters)



>mm_chr3_85865331_85866334
          Length = 1004

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatctctctgagtttgaggccgtcctggtctatataacagtaccaggccagccaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatctctctgagtttgaggccgtcctggtctatataacagtaccaggccagccaagaat 260

                                                                       
Query: 61  acatagtgaacccctgtctcagaaacaattattgtatgtgttagcatttttctaagtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatagtgaacccctgtctcagaaacaattattgtatgtgttagcatttttctaagtaat 320

                                                                       
Query: 121 gaggtaattcatactaattattaagacatgtgaaatttaatttttaaaaaaaaactccat 180
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 321 gaggtaattcatactaattattaagacatgtgaaatttaatttttttaaaaaaactccat 380

                                                                       
Query: 181 aataattttgttgtggctgaattatctaaaatgctactgagaattggcaatcttagccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataattttgttgtggctgaattatctaaaatgctactgagaattggcaatcttagccta 440

                                                                       
Query: 241 ctgaccttttcttcatttcactaatacttccttttttgtatttcacagacccagatatat 300
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 441 ctgaccttttcttcatttcactaatacttccttttttgtagctcacagacccagatatat 500

                                                                       
Query: 301 atacctttacctgagtttgagtggtgagcctgcaagtgggttggcttgacccactcccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacctttacctgagtttgagtggtgagcctgcaagtgggttggcttgacccactcccca 560

                                                                       
Query: 361 agatggttctgacctcatttgggaaaatacgttgggatttgacaaggggtttaatatcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatggttctgacctcatttgggaaaatacgttgggatttgacaaggggtttaatatcct 620

                                                                       
Query: 421 gaggaacaactttgtcagtcagctttaaacattcttgttacatttatttgtggagagggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggaacaactttgtcagtcagctttaaacattcttgttacatttatttgtggagagggc 680

                                                                       
Query: 481 atatgctacacctggccggagtctcgtctctccttctaccatgtaggtcctagggatggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatgctacacctggccggagtctcgtctctccttctaccatgtaggtcctagggatggc 740

                                                                       
Query: 541 tcttaggtcccccggctcggcacatgctccatctactgcactgtctccatggccccatca 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 tcttaggtcccccggctcggcacatgctccatccactgcactgtctccatggccccatca 800

               
Query: 601 ctca 604
           ||||
Sbjct: 801 ctca 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)