BAC Information

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BAC

Clone NameMSMg01-176N21
Chromosome3 (Build37)
Map Location 106,289,892 - 106,290,508
singlet/doubletsinglet
Overlap geneDennd2d
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik
Downstream geneCept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176N21.T7 (MSMg01no176_n21.b1)MSMg01-176N21.TJ (MSMg01no176_n21.g1)
ACCAG371435AG371436
length1,2401,250
length of high quality
(start - end)
617 (128 - 744)324 (132 - 455)
definitionCHROMAT_FILE: MSMg01no176_n21.b1 PHD_FILE: MSMg01no176_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:09 2005CHROMAT_FILE: MSMg01no176_n21.g1 PHD_FILE: MSMg01no176_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGGCTCTNNNNNNTATCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTATCCTGAGGATGTCCATTTAAAGCCCGAAGAGTA
GAAAGGTCAGCTGGACCAACCCCCTGAGAGGGTGGCATCAGAGAGAAACC
ACATCATAGAAAAGAAGCAACCCTTCCAGTTGCTAAACCTTCTAACAAGA
GAGGCTGGTAAGAAGGGGACATTACGCCTCACCCAGTGCATGATCAGGCA
AGAAGAGATCTAATACTTTGGGAGTCTGATCTTAGGCTGTGCTTGAGTCT
GGGGCCTGCTTGATTCTCTACCACACAACCAGGAAGGCCATCCCTTCTTA
GTAGTTCCAGCAGAAGCTGAGTTTTCTTGTAGGAAAAGGTGACTGAGGTG
GAATTTGGAAGAACTGATGGTTTCCCACAGGGGCAAGAGCATTGTTTCCC
TGCTCCAGAGGTTCAGTCAGTCCTTCACAAAGCAGTCAGACCTAGATTCT
CTGGGTGATTACAGAAAACTAGGGCTGGGCTACAAAGGAAACTAGAGCAG
TGAGCTCAGGGCTAGAGCCCAGGCAGCGTGGTAAGACATAGAACTCCTCT
ATTACCTTTTAAACACACCTTCGTCCTCCCACCTCCATCCTCAGGCCCCA
CTTCTCCCTCCATCCTTACCTTGGGAAACTGGTAAGTGATCGTGGGCTCA
TAGTCATCCCCTAAACGCTTTTTCTTTAAAGAAACAACAAGAAGGTATTC
AAAGAAGTGCTGGCCTCCAGCAAAGCTAGATGGAGAATGCTCCTGGATCC
TTTCTGGTTCTGTGACAGCTTCCCCAGGATTGTTCTGGGATTGTCCTAAA
ATGGAGATGCAAGGGTCTCTTGAGTATTCTTTCCACTCCTCCATTCTGTA
ATGCGAGCGAGAATCCGGCCAACAACCCTGCCTCCAGGCTACCATGCCCA
GCCCTGACAAGGCCCCCCAGTGAAGGATCTGAGCCAGGGGGGCAATTTTC
CTACCTGCCCCGGGAAAATTGAAACTGGGGAGTGGCCCCCTCACAAAAAA
AAACCTTGTTGTCAAACCCGTGGACCCTTTCTTGCGTTAAAATGTTCTTT
TAAGCCCCCTTTCTCCCAACCTTGTCATTTCCCCCTCTCTATACACATCT
CTTCTTTTTCTTTTGTCCCTCCATCCATCTTCTCTCAATATAAACTCTGC
TATGCACTCCCCGCCCTTTTTTCATATTAATAACAAACAC
NNNNTTAAAGATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTAAACTGACCAATACTGAATGGNAGAGA
AGCACCTGAACTTTTAAACACCCTCCTTAATCATCAGGAAAATGCAAATC
AAAACAAGCCTGATTCCACCTCACACCAGTCAGAACGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGTGAGGATGTGAAGAAAGAGGAACACTC
CTCCATTGTTGGTTGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCAAGTCGTCAGAAAATTGGACATAGTACTAATGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGTAGGAC
ACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCACAAGCTG
GAAATTTTTTTATGCCCCTCAACAGAGGAATGGATACCGAAAAAGAAAAA
CATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTCATGA
AATTCCTAGGCAAATGGATGGACCTGGATGGCATCATCCTGAGTGAGGTA
ACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACG
CATGAAATTCATGAAGAATGAAGACCAGAGTGTGGACACTGTGCCCCTTC
TTAGAATTGGGAACAAAACACACATGGAAGGAGTTACCGAGACAAAGTTA
GGAGCTGTGATGAAAGGATGCACCATCTAGAGACTGCCATATCTAGGGAT
CCACCCCATAATCAGCTTCCTAAAGCTGACCCCCATGCATACAGTACCCA
GATTTTGCTGAAAGGACCCAGATATAGTTGCCTCCTTGTGAGACTAGGCC
CGGGCCTAGCCAAAATAAGAAGGGGATGCTCACAAACCGCCTAGGGGATG
GATTCCAGGGTCTCCCATTGAAAGAACTGGGGAAAAGTACTCCAAGGACT
CTAAGGGTAATCTCCCCCCCTTATAGTTAAAAAACCCTTTTTGAAACAAA
CCCTTTACCCCGTGAACTCTTGTACTCTAATGGTAAATTATTCCAACGAA
TGGGCTAATTCCGCCTCTCCTCTGTAAAAAAAGATTCCATTTCTTACACC
CACATTTTTTTTTCTCCCCACACCGGGAGAAGGCCCTCGCTCACAATAAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_n21.b1 MSMg01no176_n21.b1 CHROMAT_FILE:
MSMg01no176_n21.b1 PHD_FILE: MSMg01no176_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:09 2005
         (617 letters)



>mm_chr3_106289692_106290708
          Length = 1017

 Score = 1154 bits (597), Expect = 0.0
 Identities = 612/617 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagggtggcatcagagagaaaccacatcatagaaaagaagcaacccttccagttgctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gagggtggcatcagagagaaaccacatcatagaaaagaagcaacccttccagttgctaaa 758

                                                                       
Query: 61  ccttctaacaagagaggctggtaagaaggggacattacgcctcacccagtgcatgatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ccttctaacaagagaggctggtaagaaggggacattacgcctcacccagtgcatgatcag 698

                                                                       
Query: 121 gcaagaagagatctaatactttgggagtctgatcttaggctgtgcttgagtctggggcct 180
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 697 gcaagaagagatctaatactttgggagactgatcttaggctgtgcttgagtcgggggcct 638

                                                                       
Query: 181 gcttgattctctaccacacaaccaggaaggccatcccttcttagtagttccagcagaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gcttgattctctaccacacaaccaggaaggccatcccttcttagtagttccagcagaagc 578

                                                                       
Query: 241 tgagttttcttgtaggaaaaggtgactgaggtggaatttggaagaactgatggtttccca 300
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 577 tgagttttcctgtaggaaaaggtgactgaggtggaatttggaagaactgaaggtttccca 518

                                                                       
Query: 301 caggggcaagagcattgtttccctgctccagaggttcagtcagtccttcacaaagcagtc 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 517 caggggcaagagcattgtttccctgctccagagtttcagtcagtccttcacaaagcagtc 458

                                                                       
Query: 361 agacctagattctctgggtgattacagaaaactagggctgggctacaaaggaaactagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agacctagattctctgggtgattacagaaaactagggctgggctacaaaggaaactagag 398

                                                                       
Query: 421 cagtgagctcagggctagagcccaggcagcgtggtaagacatagaactcctctattacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagtgagctcagggctagagcccaggcagcgtggtaagacatagaactcctctattacct 338

                                                                       
Query: 481 tttaaacacaccttcgtcctcccacctccatcctcaggccccacttctccctccatcctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttaaacacaccttcgtcctcccacctccatcctcaggccccacttctccctccatcctt 278

                                                                       
Query: 541 accttgggaaactggtaagtgatcgtgggctcatagtcatcccctaaacgctttttcttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 accttgggaaactggtaagtgatcgtgggctcatagtcatcccctaaacgctttttcttt 218

                            
Query: 601 aaagaaacaacaagaag 617
           |||||||||||||||||
Sbjct: 217 aaagaaacaacaagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)