BAC Information

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BAC

Clone NameMSMg01-176O20
Chromosome3 (Build37)
Map Location 106,289,829 - 106,290,541
singlet/doubletsinglet
Overlap geneDennd2d
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik
Downstream geneCept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176O20.T7 (MSMg01no176_o20.b1)MSMg01-176O20.TJ (MSMg01no176_o20.g1)
ACCAG371478AG371479
length1,2301,263
length of high quality
(start - end)
715 (92 - 806)609 (141 - 749)
definitionCHROMAT_FILE: MSMg01no176_o20.b1 PHD_FILE: MSMg01no176_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:17 2005CHROMAT_FILE: MSMg01no176_o20.g1 PHD_FILE: MSMg01no176_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAGTCCTNNNNNNGACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTATCCTGAGGATTTCCTTTACGGCCCGAAGATTAGAA
AGGTCAGCTGGACCAACCCCCTGAGAGGGTGGCATCAGACAGAAACCACA
TCATAGAAAAGAAGCAACCCTTCCAGTTGCTAAACCTTCTAACAAGAGAG
GCTGGTAAGAAGGGGACATTACGCCTCACCCAGTGCATGATCAGGCAAGA
AGAGATCTAATACTTTGGGAGTCTGATCTTAGGCTGTGCTTGAGTCTGGG
GCCTGCTTGATTCTCTACCACACAACCAGGAAGGCCATCCCTTCTTAGTA
GTTCCAGCAGAAGCTGAGTTTTCTTGTAGGAAAAGGTGACTGAGGTGGAA
TTTGGAAGAACTGATTGTTTCCCACAGGGGCAAGAGCATTGTTTCCCTGC
TCCAGAGGTTCAGTCAGTCCTTCACAAAGCAGTCAGACCTAGATTCTCTG
GGTGATTACAGAAAACTAGGGCTGGGCTACAAAGGAAACTAGAGCAGTGA
GCTCAGGGCTAGAGCCCAGGCAGCGTGGTAAGACATAGAACTCCTCTATT
ACCTTTTAAACACACCTTCGTCCTCCCACCTCCATCCTCAGGCCCCACTT
CTCCCTCCATCCTTACCTTGGGAAACTGGTAAGTGATCGTGGGCTCATAG
TCATCCCCTAAACGCTTTTTCTTTAAAGAAACAACAAGAAGGTATTCAAA
GAAGTGCTGGCCTCCAGCAAAGCTAGATGGAGAATGCTCCCGGATCCTTT
CTGGTTCTGTGACAGCTTCCCCAGGATTGTTCTGGGATTGTCCTTAAATG
GAGATGCAAGGGTCTCTTGAGTATTCTTTCCACTCCTCCATTCTGAAGTG
CGAGCGAGAATCTGGGCAACACCATGCCTCAAGGCTACATGCCCAGCCTG
ACCAGGCCCCCCAGTCAGGATCGAAGCAAGGGGGCATTTTCCCTACTGTC
CTGGAAAATTTGAACCGGGGGAGGACCCCGGAACTAAAAAAAACCCCGTG
GTTAACCCGAGGACCCCTCCCGGTGTATAAGTCTCTGGGGCCCTCAGCCC
TGACCCGTAATATCTCCCCGCAGGACAACCCTCGGCGTTTTTTTTACCCC
CTTTACATTCTTCTCTTTCATCTTCTATATTACCCTTGTTCCTTTTTTCA
TTTTATTAAATTCTCCCTCTTCATAGCTCT
CCATTTCTTTNNNNCAAGATGGCAGCCGTGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAACTGACGAATACTGAA
TGGNAGAGAAGCACCTGAAACCATGTTCAACATCCTTAACCATCAGGAAA
ATGCAAATCAAAACAACCCTGATTCCACCTCACACCAGTCAGAACGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGAAGAAAGA
GGAACACTCCTCCATTGTTGGTTGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGCAAGTCGTCAGAAAATTGGACATAGTACTAATGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGT
AAGTAGGACACATGTTCTACTATGTTCATAGCAGCCTTATTTATAATAGC
CACAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTCATGAAATTCCTAGGCAAATGGATGGACCTGGATGGCATCATCCT
GAGTGAGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACTTAGGATACCCAAGATATAAGATACAAT
TTGCTAAACGCATGAAATTCAAGAAGAATGAAGACCAAAGTGTGGACACT
GTGCCCCTTCTTAGAATTGGGAACAAAACACACATGGAAGGAGTTACAGA
GACAAAGTTAGGAGCTGTGATGAAAGGATGGACCATCTATAGACTGCCAT
ATCTAGGGATCCCCCCCATAATCAGCTTCCTAAAGCTGACACCATTGCAT
ACAGTATCAAGATTTTGCCTGAAAGGACCCAAATATAGTTGTCCTCTTGT
GAGAATAACCCAGGGCCCAATCAAACCATAAAAGGGAATGTCCCCAATCC
CCTTACGGGATGCATTCCCAGGTCTTCCCATGGTAATAAACTGTGGAATA
ATACCCTTCGTAACTATATTGAGATTTTTCTCCCCCTTATTTATTATCAA
CATTTTTTAAACTTACCCATTTTCCCTCTATCTCTTATATACCCACCTGT
CCTATTATTCTTCTAACACTCTGCTTAGTTTTTCCTCTTCTTTTTATTAA
TAAAATCTCTTTTTACCGCACTACACTTTTATTGTCCCTCCTTTATCTAA
TATTCTCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_o20.b1 MSMg01no176_o20.b1 CHROMAT_FILE:
MSMg01no176_o20.b1 PHD_FILE: MSMg01no176_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:17 2005
         (715 letters)



>mm_chr3_106289629_106290743
          Length = 1115

 Score = 1309 bits (677), Expect = 0.0
 Identities = 704/713 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agattagaaaggtcagctggaccaaccccctgagagggtggcatcagacagaaaccacat 60
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 913 agattagaaaggtcagctggaccaacctcctgagagggtggcatcagagagaaaccacat 854

                                                                       
Query: 61  catagaaaagaagcaacccttccagttgctaaaccttctaacaagagaggctggtaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 catagaaaagaagcaacccttccagttgctaaaccttctaacaagagaggctggtaagaa 794

                                                                       
Query: 121 ggggacattacgcctcacccagtgcatgatcaggcaagaagagatctaatactttgggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ggggacattacgcctcacccagtgcatgatcaggcaagaagagatctaatactttgggag 734

                                                                       
Query: 181 tctgatcttaggctgtgcttgagtctggggcctgcttgattctctaccacacaaccagga 240
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 733 actgatcttaggctgtgcttgagtcgggggcctgcttgattctctaccacacaaccagga 674

                                                                       
Query: 241 aggccatcccttcttagtagttccagcagaagctgagttttcttgtaggaaaaggtgact 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 673 aggccatcccttcttagtagttccagcagaagctgagttttcctgtaggaaaaggtgact 614

                                                                       
Query: 301 gaggtggaatttggaagaactgattgtttcccacaggggcaagagcattgtttccctgct 360
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 613 gaggtggaatttggaagaactgaaggtttcccacaggggcaagagcattgtttccctgct 554

                                                                       
Query: 361 ccagaggttcagtcagtccttcacaaagcagtcagacctagattctctgggtgattacag 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccagagtttcagtcagtccttcacaaagcagtcagacctagattctctgggtgattacag 494

                                                                       
Query: 421 aaaactagggctgggctacaaaggaaactagagcagtgagctcagggctagagcccaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaactagggctgggctacaaaggaaactagagcagtgagctcagggctagagcccaggc 434

                                                                       
Query: 481 agcgtggtaagacatagaactcctctattaccttttaaacacaccttcgtcctcccacct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agcgtggtaagacatagaactcctctattaccttttaaacacaccttcgtcctcccacct 374

                                                                       
Query: 541 ccatcctcaggccccacttctccctccatccttaccttgggaaactggtaagtgatcgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccatcctcaggccccacttctccctccatccttaccttgggaaactggtaagtgatcgtg 314

                                                                       
Query: 601 ggctcatagtcatcccctaaacgctttttctttaaagaaacaacaagaaggtattcaaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggctcatagtcatcccctaaacgctttttctttaaagaaacaacaagaaggtattcaaag 254

                                                                
Query: 661 aagtgctggcctccagcaaagctagatggagaatgctcccggatcctttctgg 713
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 253 aagtgctggcctccagcaaagctagatggagaatgctcctggatcctttctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)