CATAATTGCGGCCGCAAANGATCATTTCGAAGCGGGCCGCGGAANCAGAA
TGACTGACGGGCCAGGAGACAGGNGAACCCNAGGCCANAACCAAAACGCA
ACCCGCNANANAANGNGAANGANAAAAGNAAAANAACCCAACCANNNCCG
ACAGNCGGNNNNGNNNAGNAAGGNNGAANNCAACGNNNCNAGNNACNNNN
ACAAACNNNCCCNAAAAGCGGCCACCTTTTTTTTCCTCAGAAAGTTCCAT
ACAGTGCATTTGACCATGTTCACCCTGCCTTTACAGACCCTTTTTTTTTT
TTCAGCCNNNACAGACCNNCCANGNNCACCCNGGCCCCACCGCCCCNCCA
AGNNCACCCNGCCNNCACAGANCCNCCAGGNNCACCCAGCCCCNACAGAA
AGACCAAGGACACCCAGCCCNNACAGACGNNCCAGGANCACCCGGCCNNA
ACAGANCCNCCACGGNCACCCNGCCAACACAGAACCACCAAGAAAGCCCC
ACAAANACAGAAACNCCAAGGAAGCCCAGCCNANACAGAAGCCCAAACAC
CCCAGCCGCAAAACCGAACAACCCGCACAACACAACNAACGAGGGGGGGA
GAAAGAAAAAGAACAACACCACCCCGACCCCGCTCTCACACACCCCGCCC
CGCCCGCGCAGGCGCCACGCCCCACCCGCACACACCGCCCCACCCCGCCC
GC

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTTTGGTAAGGGACAGTGTGTT
CAACCAAGGATAACATTTGCTAAATGTGGCACAGAAAGGTATTCTGAATA
ATGAAAAGGTACAATCACATTGTCTGAGGACATATAAACATATTTATATA
CACTATGTTGGACTTCGTCTTAAGCCATTTCTAATTGTTTAGCCAAAATA
AATTTGTGAGAAATATAGACTTATCTGAAATAATATAGAATTTTCACCTT
TCACTGAATTTTCTTTAACATTTTCCTTAATTACAATGTAATCATCAGTA
TTCAGATATTAACATGGGCATTAAACTTATAGAATGGAATATAATCTATA
ATAGTTTCAAATTTCATTGGTTTTATCCCAATTTTTGTTTATTCTGCACT
GAATTGTTGTATCTCTCTCTTCTCTCTCTGGTTTTGTCTTGCTGAATTCA
ATCCCAGAGCCGAAAGCTTTCCATGTGCAAAGTGGTCTACTACTGAGTTA
CATCCCAGCCCTTTCTTTGCTCCTTTATCTTCTGTGACATTTCTTTTCTC
CTTTTATCCAGATTGGCACAGTATTTCATTGTTTGTCATGGTTTACTTGA
GTAATGCAAGTAAGATATTTTGTGGACTGACAAATAACTCTAGGTGTAAT
TTACCCCCTACGATATG

Query= MSMg01no177_a09.g1 MSMg01no177_a09.g1 CHROMAT_FILE:
MSMg01no177_a09.g1 PHD_FILE: MSMg01no177_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:29 2005
         (638 letters)



>mm_chr3_16932403_16933440
          Length = 1038

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattttggtaagggacagtgtgttcaaccaaggataacatttgctaaatgtggcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tcattttggtaagggacagtgtgttcaaccaaggataacatttgctaaatgtggcacaga 776

                                                                       
Query: 61  aaggtattctgaataatgaaaaggtacaatcacattgtctgaggacatataaacatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aaggtattctgaataatgaaaaggtacaatcacattgtctgaggacatataaacatattt 716

                                                                       
Query: 121 atatacactatgttggacttcgtcttaagccatttctaattgtttagccaaaataaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atatacactatgttggacttcgtcttaagccatttctaattgtttagccaaaataaattt 656

                                                                       
Query: 181 gtgagaaatatagacttatctgaaataatatagaattttcacctttcactgaattttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtgagaaatatagacttatctgaaataatatagaattttcacctttcactgaattttctt 596

                                                                       
Query: 241 taacattttccttaattacaatgtaatcatcagtattcagatattaacatgggcattaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 taacattttccttaattacaatgtaatcatcagtattcagatattaacatgggcattaaa 536

                                                                       
Query: 301 cttatagaatggaatataatctataatagtttcaaatttcattggttttatcccaatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cttatagaatggaatataatctataatagtttcaaatttcattggttttatcccaatttt 476

                                                                       
Query: 361 tgtttattctgcactgaattgttgtatctctctcttctctctctggttttgtcttgctga 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 475 tgtttattctgcactgaattgttgtatctctctcttttctctctggttttgtcttgctga 416

                                                                       
Query: 421 attcaatcccagagccgaaagctttccatgtgcaaagtggtctactactgagttacatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 attcaatcccagagccgaaagctttccatgtgcaaagtggtctactactgagttacatcc 356

                                                                       
Query: 481 cagccctttctttgctcctttatcttctgtgacatttcttttctccttttatccagattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 355 cagccctttctttgctcctttatcttctgtgacatttcttttctccttttatccagactg 296

                                                                       
Query: 541 gcacagtatttcattgtttgtcatggtttacttgagtaatgcaagtaagatattttgtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gcacagtatttcattgtttgtcatggtttacttgagtaatgcaagtaagatattttgtgg 236

                                              
Query: 601 actgacaaataactctaggtgtaatttacccccta 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 actgacaaataactctaggtgtaatttacccccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)