BAC Information

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BAC

Clone NameMSMg01-177D24
Chromosome3 (Build37)
Map Location 60,271,245 - 60,271,667
singlet/doubletsinglet
Overlap geneLOC100040485
Upstream geneEG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823
Downstream geneMbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177D24.T7 (MSMg01no177_d24.b1)MSMg01-177D24.TJ (MSMg01no177_d24.g1)
ACCAG371691AG371692
length721724
length of high quality
(start - end)
422 (45 - 466)406 (77 - 482)
definitionCHROMAT_FILE: MSMg01no177_d24.b1 PHD_FILE: MSMg01no177_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:47 2005CHROMAT_FILE: MSMg01no177_d24.g1 PHD_FILE: MSMg01no177_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCATTGACTGAACTTTACAACTCGAAACAGTGCCAAAAACAGGA
ACAGAATCATGAAGGCCTCCCTCCTTTCTCCCAGCCAGGTATTGGAAAAA
GGATTATTGAACCATCTGTATATACATGTTATTTGTCCATGCTAAGGCAT
CTAGTCAAAAAAGGTGTTACAAGTATAAATTGCCATTAATTTTTGTTGTT
CCATACTGCTGCTAATATTTGACACAATAAGACATTTATTGAGTTGACAC
TCTGTGGGGTCAAGAAGAGATGTCTTAGAAATTTTTAGTTTACCTTCCTA
ATCCAAATAGAAGTTTATCATATTTTTATGTTCACAGCCAACTTCACTGC
ATATGCTGCATACACACAGCTACCATTTCATAGACTGCTCATTTGCTGAT
CTCACTCATTTGTGTCTAGGATGATTGTCTGATCTATATCAACTGGAAAG
GATAAGAAGTCATTCCATATTACTGTGTAATACTCGATCGTTCTGAAGCT
GCTATTATCGTTTCTGCATCATTTTAAAGGTTACTTCATCACAAATGGAG
CCTTATGAGATAACCCTTATATCCTTTGAAATTATCCCTGCTCTCTGGGG
CAAGATACTTGAAACAACTATGTGTAATTTCTTCCTGAGAACAAAAGTTA
GATACTTCTCTAAAGAAACAG
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCAGTACCCCATTT
TTTAATAGGGTTATTTGGTTCTCTGCCCTCTAACTTCTAGAGTTTCTGTA
TATATTGGATATTAGACCTCTATTGCATATAGGATTGGTAAATATCTTTT
CCCAATCTGTTGGTTGCCCTTTTGTCCTTTTGACAGTGTCCTTTGCCTTA
GAAAAAAGCTTTTCAATTTTATGAGGTTCCAATTGTCGATAATTGATCTT
AGAACATAAGCTATTGGTGTTCTCTTCAGGAAATTTTCCCCTATTCCCAT
GTGTTCGAGGCTCTTCTCCACTTTCTTTTCTATTAGTTTCAGAGTATCTG
GATTTACGTGAAGATCCTTGACCCACTTGGACTTGACATAAGAATGGATC
AATTTGCATTCTTCTACATGCTAATCACCAGCATATAGGACCAGCACCAT
TTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCTATTGTC
AAAGATCAAGTGACCATAGATGTCTTGGTTCATTACTGGGTCAACAGTTT
TAATCCATTGATCTAACTGCCTGTCCCTGTACACATACCATGCAGATTTT
ATCACTATTGCTCTGTAGTACAAATTGAGGACAGGGATGATAAATCCCCA
AAAGTTCTTATGTTGTAAAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_d24.b1 MSMg01no177_d24.b1 CHROMAT_FILE:
MSMg01no177_d24.b1 PHD_FILE: MSMg01no177_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:47 2005
         (422 letters)



>mm_chr3_60271133_60271954
          Length = 822

 Score =  733 bits (379), Expect = 0.0
 Identities = 409/423 (96%), Gaps = 7/423 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttcattgactgaactttacaactcgaaacagtgccaaaaacaggaacagaat 63
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 535 ggaattccttcattgactgaactttacaactcaaaacagtgccaaagacaggaacagaat 476

                                                                       
Query: 64  catgaaggcctccctcctttctcccagccaggtattggaaaaaggattattgaaccatct 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 catgaaggcctcccttctttctcccagccaggtattggaaaaaggattattgaaccatct 416

                                                                       
Query: 124 gtatatacatgttatttgtccatgctaaggcatctagtcaaaaaaggtgttacaagtata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtatatacatgttatttgtccatgctaaggcatctagtcaaaaaaggtgttacaagtata 356

                                                                       
Query: 184 aattgccattaatttttgttgttccatactgctgctaatatttgacacaataagacattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aattgccattaatttttgttgttccatactgctgctaatatttgacacaataagacattt 296

                                                                       
Query: 244 attgagttgacactctgtggggtcaagaagagatgtcttagaaatttttagtttaccttc 303
           |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 295 attgagttgacactctgttgggtcaagaagagatgtcttagaaattttcagtttaccttc 236

                                                                       
Query: 304 ctaatccaaatagaagtttatcatatttttat-------gttcacagccaacttcactgc 356
           |||||||||||||||||  |||||||||||||       |||||||||||||||||||||
Sbjct: 235 ctaatccaaatagaagtagatcatatttttattttttatgttcacagccaacttcactgc 176

                                                                       
Query: 357 atatgctgcatacacacagctaccatttcatagactgctcatttgctgatctcactcatt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 atatgctgcatacacacagctaccatttcatagactgctcatttgctgatctcactcatt 116

              
Query: 417 tgt 419
           |||
Sbjct: 115 tgt 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)