BAC Information

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BAC

Clone NameMSMg01-177M14
Chromosome3 (Build37)
Map Location 107,959,414 - 107,959,600
singlet/doubletsinglet
Overlap genenone
Upstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654
Downstream geneAmigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177M14.T7 (MSMg01no177_m14.b1)MSMg01-177M14.TJ (MSMg01no177_m14.g1)
ACCAG372072AG372073
length755729
length of high quality
(start - end)
322 (43 - 364)189 (85 - 273)
definitionCHROMAT_FILE: MSMg01no177_m14.b1 PHD_FILE: MSMg01no177_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:25 2005CHROMAT_FILE: MSMg01no177_m14.g1 PHD_FILE: MSMg01no177_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAAGAGGATCC
GCGGAATTCCTATTGCATTCCAAGCTCGTTGGCTTCAAGGATTTTCTAGG
ACATTGGAACACTGATGGAGGCTCACCTATGTTAAAATTCAATCTTTAAA
GGCACTTATAATAAAACAATACTGAAAGAGAGCATACACCATACTGACTC
GGGGACAGGGTTTTAATATATGGGCTATGAGAATGCCAAGGTTCCAGGAG
GCTGAGTTTCCTTGAAACTCTTTGCCTTGTGACTGCCTCCAGGCCTTTCG
ACCCCAACAGGCAGACTTCACTGGAGTGGGCATAGCAGGTGGGGAGAGGG
AGGGAGAGGGAGGNTCCCCCTCCCCTCTTTACCCTTTTCTTTATTTTCTC
TTCTTCTTTTTTCCCCCCCCCTGCGTCTTATTTCCCCCTCCTTCCTCTTT
CCTNCCCCCGCGTTCTTCCTTCTTTTTTCTTTTCTTTTCCCCTTTTTCTC
TCTATCTTTTCCCCTGCTTTTTTCCCCCGCTCGCCCCTCTTTTTATTCTC
TTTCCTTTTTTTACCTTATTTTTATCGGTCTTACCGAATTTATCACCCTC
TCCCCGCCCTCACCCATCATCTTTACTCCCCCTGTTCCTCTCGTTTCCGC
TTTCTTACCTTATTTTTTTTATTCGGATGTCTGTTTTTAATTCAACATAT
CGAATTTTCCATGCACCATTATCCATCCTCTCTGCTATTTGACTATCCTC
CACCC
NNNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATGGTGACTGCT
GGAGTCAGTCACCAGCTGTAGGCTAATCAGTTCTCATGGTTGTTGGCTTG
GGGCCTAAAGAAGCCAGCCTATTCTGAGTTCTCTGGGCAAGTCACTGGTT
TTATGGCTCTTTGTCTGGATCTAGTAAACAATTCTANGAAATTCCCTTTT
GGAGCCAGAAGGAGTTGTTGGCTATGCAGGTCAGTCCCCCACAAGGCGTG
GTGTCAGCTCCGGATCTGAATCCTTTTTTTTTGTTTCAGATTCATGGCTT
CTGTTATGGGGGGGCTTTTTTTTTTTTTGCCCCCCGGCCCTTGAACTTTA
GAGAATACTGGGGTTCCTGTTTAGGGAATTATATATCCCCCCCCGCCCTT
TTTAATTTTCCCCCCCCTTCTTTGTAAGAAAAAAATCATCCCCCCCTAAT
ATTTTCCTTCTTACAAATTTTTGAAAAGTCTATAAACCCTTCGGAGTTTT
CTTTTTTATTTAAGTGGGAATACATCCTTGTGGGATTATTCTCCCGCCTC
TGGCTGCTCCCTTCACTTTGTCACTCTTTGTTCTCTCGTCGTTTTTGTAA
ACATTGTTTCTTAAACTATAATGCCCCTTACTTTTTTTTTCATTATTACT
ATCTCTTATTTTCTCTCTACTTCTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_m14.g1 MSMg01no177_m14.g1 CHROMAT_FILE:
MSMg01no177_m14.g1 PHD_FILE: MSMg01no177_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:25 2005
         (189 letters)



>mm_chr3_107959214_107959800
          Length = 587

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%), Gaps = 2/189 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagatggtgactgctggagtcagtcaccagctgtaggctaatcagttctcatggttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agagatggtgactgctggagtcagtcaccagctgtaggctaatcagttctcatggttgtt 328

                                                                       
Query: 61  ggcttggggcctaaagaagccagcctattctgagttctctgggcaagtcactggttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggcttggggcctaaagaagccagcctattctgagttctctgggcaagtcactggttttat 268

                                                                       
Query: 121 ggctctttgtctggatctagtaaacaattctangaaattcccttttggagccagaaggag 180
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 267 ggctctttgtctggatctagtaaacaattcta-g-aattcccttttggagccagaaggag 210

                    
Query: 181 ttgttggct 189
           |||||||||
Sbjct: 209 ttgttggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 587
Length adjustment: 8
Effective length of query: 181
Effective length of database: 579
Effective search space:   104799
Effective search space used:   104799
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)