BAC Information

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BAC

Clone NameMSMg01-177P07
Chromosome3 (Build37)
Map Location 99,969,189 - 99,969,477
singlet/doubletsinglet
Overlap geneGdap2
Upstream geneWars2, Tbx15, M6pr-ps, Spag17, LOC623045, Wdr3
Downstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177P07.T7 (MSMg01no177_p07.b1)MSMg01-177P07.TJ (MSMg01no177_p07.g1)
ACCAG372191AG372192
length750714
length of high quality
(start - end)
292 (67 - 358)---
definitionCHROMAT_FILE: MSMg01no177_p07.b1 PHD_FILE: MSMg01no177_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:37 2005CHROMAT_FILE: MSMg01no177_p07.g1 PHD_FILE: MSMg01no177_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTTTCTCATCCGCACCTCCAAAGAGAAACTGATTTTTCTCA
TTAAAAAGAGATTTAACTCCTGCCTGCTCCCAACATAAACTCATGGCCAT
GCTTGTGCAAAAGCGGAGCAGCAAACCCAAAGGTGGCAGAAACCTAAACA
CTGTCTCACTCCACAGAATGTGTGGTAAGAAATATAGCCTGTAAGAGATG
ATGCATATATCTGAAAGGATTTCCAGACTTAGATTAAGAATTCTAGGGAT
AGACTAAAAACAAGCAGGGTGTTGGGCATGATGGGAACTGTGTGTGTGGG
GGGGAGGGGGANTANACCCGTTTACCCTGATTTCCCCCCTTATCCTAAAA
TCACTTTAACCGGTCCCCCCCCGACACTTTTACTGGATCTCAATTGAACA
GAGCCGCACCAATGAACTACGTTTGCTACCAATCATATATACCTTACCAT
TATTCATACTCCTCCTGTACGCACCGATCTCTATTTAATAAGGTATAATA
AGGTCATTCACCATATCCAGAAACATTTTTTTTATTGCCCCCCCTGATTA
ATACGCATATAGGGACCACAAACGCCATACACCCTTAAGCGTTAACAAAT
GTTCCCATTCACCAATCAATTTAAAAACCATCTCTCTATGGTTCCCCACT
AATTGGATCATTATTTTCCCCCTTCTCTTTGCGTCTATTACCCCCCTTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCGNGACTCGGCCTTCGGTGATGAAGGCT
TCTCCACCTGTATTTCCTCTGCATTTTCCTACTTTAAAGAAGGGTGTATC
CACCCTTGTTTGCTGGATCCAATGTCGTGTACCGATGCTTTTGCTCTGGA
TGCGCAGAATACTTAATGCCCAAACAATGACGTACTACATGATGATAATC
CCACTTCTCGCTGCATGAGAACATGTTACCTCTCCTTATCTAAGATTATC
TATACCTAATCACTACGTCGCTGGCCGCTCAGATCTTGTGACCTACCATC
CTACACCCATTGAATGGCATATGATCGAAGTAGTTTGAACACTCTCCTAG
AGAAGCACATCATAGGCGCTGCGCCACATGGCCTGTGAGCTGGTACATGA
TCCAATCCTAAGAGGACACGACCTCTTAAATAAAGGCCGTGAGTCTCCCT
GTCCTGCAACCAGCACACTTGGATCGATAGATCTGCTGAACTATCTCTAT
GGTAGAGGACATAACTCTCCTTGGCGTAGTGCCTCCTGTCAAATATGACG
GCTACGAGTATGCTAAACGTCATTGTATTAACTGTTGCCCTTGATGACTT
GTGACCTGTCGACAGCAGACTGTATGACGCCCACATTCTGTCTACCCTGG
CTTTAACTCTGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_p07.b1 MSMg01no177_p07.b1 CHROMAT_FILE:
MSMg01no177_p07.b1 PHD_FILE: MSMg01no177_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:37 2005
         (292 letters)



>mm_chr3_99968989_99969680
          Length = 692

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccgcacctccaaagagaaactgatttttctcattaaaaagagatttaactcctgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atccgcacctccaaagagaaactgatttttctcattaaaaagagatttaactcctgcctg 430

                                                                       
Query: 61  ctcccaacataaactcatggccatgcttgtgcaaaagcggagcagcaaacccaaaggtgg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 429 ctcccaacataaactcatggccatgcttgtgcaaaagcggagcagcgaacccaaaggtgg 370

                                                                       
Query: 121 cagaaacctaaacactgtctcactccacagaatgtgtggtaagaaatatagcctgtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cagaaacctaaacactgtctcactccacagaatgtgtggtaagaaatatagcctgtaaga 310

                                                                       
Query: 181 gatgatgcatatatctgaaaggatttccagacttagattaagaattctagggatagacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 309 gatgatgcatatatctgaaaggatttccagacttagattaagaattctagggatagactg 250

                                                            
Query: 241 aaaacaagcagggtgttgggcatgatgggaactgtgtgtgtggggggga 289
           ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 249 aaaacaagcagggtggtgggcatgatgggaactgtgtgtgtggggggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)