BAC Information

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BAC

Clone NameMSMg01-178A08
Chromosome3 (Build37)
Map Location 154,754,540 - 154,886,260
singlet/doubletdoublet
Overlap geneFpgt, Lrrc44
Upstream geneSlc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k
Downstream geneEG383956, Scp2-ps1, EG668902, LOC624519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178A08.T7 (MSMg01no178_a08.b1)MSMg01-178A08.TJ (MSMg01no178_a08.g1)
ACCAG372236AG372237
length733711
length of high quality
(start - end)
268 (119 - 386)129 (114 - 242)
definitionCHROMAT_FILE: MSMg01no178_a08.b1 PHD_FILE: MSMg01no178_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:43 2005CHROMAT_FILE: MSMg01no178_a08.g1 PHD_FILE: MSMg01no178_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,885,993 - 154,886,260)(154,754,540 - 154,754,668)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCA
GGCGGCCGCTATTATACTGATAAAGCTGTGTTAGCCATCAATGCCATCAG
AGACGCTGAGAAGGATAAATTTTAGCAGAACATAAACTCCAAATAGACGG
AACTGTTACCTAGATGGTTACCCTGGGCTATAGCAGTAGCTCCTTTGGGG
GCAGAGGTCAGCCTTCATTTGGCACACAGAACAGCACTGAGCACAGGCTA
TGAGCTGCCAGATTCAGAAAGTCTAAGAGATTTTGCTGTAGAGAAGGAAC
CCTCGGAAAACTGACCACACTGAGGCAAAATTTGGAACTTAACCCTACAG
TGTCTACAGTTGTGGCAGAGCCTTGGCAGAAGGCAAGGCATATGTCAGGT
CCTCTCCCCCCCCAGTGTCTCCACAATCCAGGTCTGTGCCTCATCTGTCT
TACTTGGAAGGCTGCCTCCAGGAGTTGACTCTCTGTCAATCACTGGAATG
CTCTTTCCCCATACTTTTTACACGCCATCATTCCCCCACTTCTCCAACGC
TTTGAGATTCTGCTTTTTATTCCCCCCCCCCCCGCATTTTTACCTATTTT
TTGTCTTCACATTACCATCCCTTTTCCCCCTTTTTTTTGAATCCCGTAAT
CCTGGTGTATTTCCCAATTTCCCCCCCCCGCTAAACAGCCCTACCATTCT
TCTAATTTTCTGGTTTACACTCCTCTCTCCCCN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGTGCCACGGGTTTGCCTAT
TGGAAAGATAGCAAGGAACCTTCTTTTAATGCTATCAGTCATCTCACTTA
CAAGTTTGCCTATTTCAAAACAGGGGCTAACAAAGGATAATCATTACCAT
CGGCCATACTAAGAAGGGGATACAAGCAGCCAATCAACCAACCAACCAAC
CAATCAACAGAACAAACAAGCAAACATTACCCTCTAAAAGCAAGTTTTGT
GAACCAGGGCCCTTAATGTCGCTGGATGAGAAATTTCGACTCAAGGATCC
ACTCCTTCCAGTTTTTGTTTACGAATGTGGCCTTTTGTTATTGGTGCTTA
TCATTTTTTTCTTTCCCTTACTTTTGAGGTACTGGGAAATAACCACAGAG
CCCTATGCATGCCAGCTCTATCACTGAGCTATGTGCATAATCCGTCATTT
ATCTATTTAATTAATTTAGTATCTTACGTTTGAGAGGGTTGAGATAGGAT
AGTTCAAAGGTAGTAAGCTATTGCAAGCGATTGTTCACATTCAGTTACCG
AGTGAAGTTCGATTCTATCACTTCCCCCCTTCGCACTACTGCACTTGACA
ATAGAGTGAGGAAGGCAAATCCAATTTACCACAGAAGTCCTCTAATGTGC
TTGAAATTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_a08.b1 MSMg01no178_a08.b1 CHROMAT_FILE:
MSMg01no178_a08.b1 PHD_FILE: MSMg01no178_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:43 2005
         (268 letters)



>mm_chr3_154885793_154886460
          Length = 668

 Score =  503 bits (260), Expect = e-147
 Identities = 266/268 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttagcagaacataaactccaaatagacggaactgttacctagatggttaccctgggc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 468 attttagcagaacataaactccaaatagacagaactgttacctagatggttaccctgggc 409

                                                                       
Query: 61  tatagcagtagctcctttgggggcagaggtcagccttcatttggcacacagaacagcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tatagcagtagctcctttgggggcagaggtcagccttcatttggcacacagaacagcact 349

                                                                       
Query: 121 gagcacaggctatgagctgccagattcagaaagtctaagagattttgctgtagagaagga 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gagcacaggctataagctgccagattcagaaagtctaagagattttgctgtagagaagga 289

                                                                       
Query: 181 accctcggaaaactgaccacactgaggcaaaatttggaacttaaccctacagtgtctaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 accctcggaaaactgaccacactgaggcaaaatttggaacttaaccctacagtgtctaca 229

                                       
Query: 241 gttgtggcagagccttggcagaaggcaa 268
           ||||||||||||||||||||||||||||
Sbjct: 228 gttgtggcagagccttggcagaaggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no178_a08.g1 MSMg01no178_a08.g1 CHROMAT_FILE:
MSMg01no178_a08.g1 PHD_FILE: MSMg01no178_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:43 2005
         (129 letters)



>mm_chr3_154754340_154754868
          Length = 529

 Score =  226 bits (117), Expect = 3e-64
 Identities = 126/129 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaccttcttttaatgctatcagtcatctcacttacaagtttgcctatttcaaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaccttcttttaatgctatcagtcatctcacttacaagtttgcctatttcaaaacag 260

                                                                       
Query: 61  gggctaacaaaggataatcattaccatcggccatactaagaaggggatacaagcagccaa 120
           ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||
Sbjct: 261 gggctaacaaaggataatcattaccatcttccatactaagaaggggatacaaccagccaa 320

                    
Query: 121 tcaaccaac 129
           |||||||||
Sbjct: 321 tcaaccaac 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)