BAC Information

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BAC

Clone NameMSMg01-178D19
Chromosome3 (Build37)
Map Location 61,745,353 - 61,745,582
singlet/doubletsinglet
Overlap genenone
Upstream geneP2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149, LOC676984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178D19.T7 (MSMg01no178_d19.b1)MSMg01-178D19.TJ (MSMg01no178_d19.g1)
ACCAG372386
length764760
length of high quality
(start - end)
---231 (128 - 358)
definitionCHROMAT_FILE: MSMg01no178_d19.b1 PHD_FILE: MSMg01no178_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:59 2005CHROMAT_FILE: MSMg01no178_d19.g1 PHD_FILE: MSMg01no178_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGCATGCACTCCGGAATAGTCCGTGCGTGGATTGTTGTTTTTTCGG
TTTTTGCTTTTTCCTTGTTTTCCCTGCTTTTTGTTTCTATTGGTGCTTTT
TTATTGGACCTTTTTACCATTTTTTTTCTCTCCCCGCCCAATGTTTATCT
ATTTTTTTATTTACCTTTTTTTTCCGCACTTTTTTCGCACATTCTACCTT
TTATTTTTGTTTTTCTTTTTATTGCTCGCCCATTATTTCCCTTTTCATTT
TTGTCTATTGTTTG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGATAATTACTGATACTTCCTC
AACAATGAATTTGGAATTGAGGCCCATGAACATATAAAAAGTACAGTATA
CATTTCAAGATAGTCAGACCCTTAAGCATGTAATGTAGTCTTCCATAAGT
CACCCTTGACATTAATAGAGAAGTTAGACTGCTAAAACAAACAAACAAAA
ATATGATATTTTGATGTACAAAAATGTAGCAACCACATACTAAATACAGG
AAGCATTCTGTAATAAACACTTATATTTGAAAAACTGTAAACCATGGGTG
TAAAGAATATTTGGTTTATCCCAAGGCCAANCCCAAAGNAGAAGAATATC
TTTGGAGTTTTGTGGCCCCCCCCAAAAAAAAAAAAACCAGAGTTGTCGGA
CAAATCCTTGTATAATACTAAGTACTGAAAATAATAAATTCCTGTCTCAT
CATAAATGTCAGCACATACTCATATAATCAGGGAGACCTTAGAAAGAATC
ACTTATTCGGAATACATATATGCACAAGCTGAGTCTTTAACTTATGTTAA
AACTCACTTGGCACCACTTTCGTCTAAGCTCTCGAATTGATGCGATCTAC
TATGCATCTCGACATATCCATGATCGAATATTTTTCTAATAGTAACAATC
GTGCGACTATATCAAATTGAATACTAGGGTATAACAACGCTATTAACTAC
TTAATCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_d19.g1 MSMg01no178_d19.g1 CHROMAT_FILE:
MSMg01no178_d19.g1 PHD_FILE: MSMg01no178_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:59 2005
         (231 letters)



>mm_chr3_61745153_61745783
          Length = 631

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacatataaaaagtacagtatacatttcaagatagtcagacccttaagcatgtaatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacatataaaaagtacagtatacatttcaagatagtcagacccttaagcatgtaatgta 260

                                                                       
Query: 61  gtcttccataagtcacccttgacattaatagagaagttagactgctaaaacaaacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttccataagtcacccttgacattaatagagaagttagactgctaaaacaaacaaaca 320

                                                                       
Query: 121 aaaatatgatattttgatgtacaaaaatgtagcaaccacatactaaatacaggaagcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatatgatattttgatgtacaaaaatgtagcaaccacatactaaatacaggaagcatt 380

                                                             
Query: 181 ctgtaataaacacttatatttgaaaaactgtaaaccatgggtgtaaagaa 230
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtaataaacactaatatttgaaaaactgtaaaccatgggtgtaaagaa 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)