Query= MSMg01no178_i11.b1 MSMg01no178_i11.b1 CHROMAT_FILE:
MSMg01no178_i11.b1 PHD_FILE: MSMg01no178_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:21 2005
(274 letters)
>mm_chr3_24546907_24547575
Length = 669
Score = 387 bits (200), Expect = e-112
Identities = 252/270 (93%), Gaps = 5/270 (1%)
Strand = Plus / Minus
Query: 1 caaatgcttagtgaacaatccttgtgaaatgaacattataacacaattacccactgtctt 60
||||||||||||||| |||| |||||||| ||||||||| ||| ||||||||||||| ||
Sbjct: 465 caaatgcttagtgaataatctttgtgaaacgaacattat-acaaaattacccactgtatt 407
Query: 61 ttgttcagaattatagagatttctgtttatctgaggattttccggacaacgtttcacatg 120
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 406 ttgttcagaattatagagatttctgcttatctgaggattttccagacaatgtttcacatg 347
Query: 121 cttctagaccatttattcctagaagaagactttttttgtcttctattttgtttttgcttt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 346 cttctagaccatttattcctagaagaagac-ttttttgtcttctattttgtttttgcttt 288
Query: 181 tttattttcagaacataatcccccatgaatggaagtatgtgggaaaaaaagtgcacagta 240
||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct: 287 tttattttcagaaaataatcccccatgaatggaagtatgtgg--aaaaatgtgcac-gga 231
Query: 241 taatagaatttattccctcttcttgctaag 270
||| | ||||||||||||||||||||||||
Sbjct: 230 taaaataatttattccctcttcttgctaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 669
Length adjustment: 9
Effective length of query: 265
Effective length of database: 660
Effective search space: 174900
Effective search space used: 174900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no178_i11.g1 MSMg01no178_i11.g1 CHROMAT_FILE:
MSMg01no178_i11.g1 PHD_FILE: MSMg01no178_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:21 2005
(284 letters)
>mm_chr3_24444127_24444805
Length = 679
Score = 514 bits (266), Expect = e-150
Identities = 278/284 (97%), Gaps = 5/284 (1%)
Strand = Plus / Plus
Query: 1 ctcttacctatagcacttaacaccaagcagtatgttactgtaactatttcatacttatat 60
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 201 ctcttacctatagcacttaacaccaagcagt----tactgtaactattt-atacttatat 255
Query: 61 ttattcacctgaaacactgctctaaatatatttatttaaagatacatctaaagcagttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttattcacctgaaacactgctctaaatatatttatttaaagatacatctaaagcagttat 315
Query: 121 caaaaatatatgtggcacaatgcaactttgtttactcataggtaaaggtgaaaggatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caaaaatatatgtggcacaatgcaactttgtttactcataggtaaaggtgaaaggatttt 375
Query: 181 ttaaggaaaattataatatttgtatatattgcccttagacttacacaaaataaaattaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttaaggaaaattataatatttgtatatattgcccttagacttacacaaaataaaattaac 435
Query: 241 gtgagaggtaattagagtgtaccatgcttatcttttcattctat 284
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtgagagataattagagtgtaccatgcttatcttttcattctat 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 679
Length adjustment: 9
Effective length of query: 275
Effective length of database: 670
Effective search space: 184250
Effective search space used: 184250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
