Query= MSMg01no178_k20.b1 MSMg01no178_k20.b1 CHROMAT_FILE:
MSMg01no178_k20.b1 PHD_FILE: MSMg01no178_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:31 2005
(532 letters)
>mm_chr3_150096740_150097671
Length = 932
Score = 915 bits (473), Expect = 0.0
Identities = 504/523 (96%), Gaps = 14/523 (2%)
Strand = Plus / Minus
Query: 7 attcttgatgcatgccacccatgctaccttcttcccagtatgcagggaaaatatactaac 66
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 attcttgatgcaggcaacccatgctaccttcttcccagtatgcagggaaaatatactaac 871
Query: 67 tgacaagaagattaaaaaagccatgttctcacttagtgttttatttcataatacattcta 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tgacaagaagattaaaaaagccatgttctcacttagtgttttatttcataatacattcta 811
Query: 127 gggctgatgacagcacagagtctttgaaggtatatacagagataaatgtgcatatatata 186
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gggctgatgacagcacagagtctttgaaggtatatacagagataaatgtgc--------- 760
Query: 187 tatatatatatatatatatatatatatatatatatcacaaaatcacctccagaaggatgc 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 -----atatatatatatatatatatatatatatatcacaaaatcacctccagaaggatgc 705
Query: 247 tttattagccaatgctgtctaatggctacactgagatcagacttctttaaagaagaatga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tttattagccaatgctgtctaatggctacactgagatcagacttctttaaagaagaatga 645
Query: 307 cttaatgattaataaattaatacgattaagattacttcatgcagaatggactgtgtaaag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cttaatgattaataaattaatacgattaagattacttcatgcagaatggactgtgtaaag 585
Query: 367 atgtatacgagaacacatgatacctttattactttcatgtttgcagatgcattataattt 426
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 584 atgtatatgagaacacatgatacctttattactttcatgtttgcagatgcattatatttt 525
Query: 427 gaagtggacacagaaatgataacacgatattgctattttagacttgcccttgtcaatatt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaagtggacacagaaatgataacacgatattgctattttagacttgcccttgtcaatatt 465
Query: 487 gagtcagtgaaaagacactcatgtgcaggttggcaacattttc 529
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 464 gagtcagtgaaaagacgctcatgtgcaggttggcaacattttc 422
Score = 60.7 bits (31), Expect = 3e-13
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 173 tgtgcatatatatatatatatatatatatatatat 207
|||| ||||||||||||||||||||||||||||||
Sbjct: 726 tgtg-atatatatatatatatatatatatatatat 759
Score = 60.7 bits (31), Expect = 3e-13
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 192 atatatatatatatatatatatatatatat-caca 225
|||||||||||||||||||||||||||||| ||||
Sbjct: 730 atatatatatatatatatatatatatatatgcaca 764
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 180 atatatatatatatatatatatatatatat 209
||||||||||||||||||||||||||||||
Sbjct: 730 atatatatatatatatatatatatatatat 759
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 182 atatatatatatatatatatatatatatat 211
||||||||||||||||||||||||||||||
Sbjct: 730 atatatatatatatatatatatatatatat 759
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 184 atatatatatatatatatatatatatatat 213
||||||||||||||||||||||||||||||
Sbjct: 730 atatatatatatatatatatatatatatat 759
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 186 atatatatatatatatatatatatatatat 215
||||||||||||||||||||||||||||||
Sbjct: 730 atatatatatatatatatatatatatatat 759
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 188 atatatatatatatatatatatatatatat 217
||||||||||||||||||||||||||||||
Sbjct: 730 atatatatatatatatatatatatatatat 759
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 190 atatatatatatatatatatatatatatat 219
||||||||||||||||||||||||||||||
Sbjct: 730 atatatatatatatatatatatatatatat 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 9
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_k20.g1 MSMg01no178_k20.g1 CHROMAT_FILE:
MSMg01no178_k20.g1 PHD_FILE: MSMg01no178_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:32 2005
(335 letters)
>mm_chr3_150046731_150047465
Length = 735
Score = 629 bits (325), Expect = 0.0
Identities = 331/333 (99%)
Strand = Plus / Plus
Query: 1 aagaagttagaaaccaacaacccaaataatacgatttaaagatggaatacagagctattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaagttagaaaccaacaacccaaataatacgatttaaagatggaatacagagctattt 260
Query: 61 gttttatcttaaacacatttgcctgttgctcccccttggttataacttcaaacaccattt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gttttatcttaaacacatttgcctgttgctcccccttggctataacttcaaacaccattt 320
Query: 121 gtttctagacattgatatttaatcacctatactttatccatcctaattcctatctgtgat 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gtttctagacattgatatttaatcacctatactttatccatcctaatttctatctgtgat 380
Query: 181 atttctcaattttagtcataatttctcaactgaaattgtaattttgataatgtcaatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctcaattttagtcataatttctcaactgaaattgtaattttgataatgtcaatgtt 440
Query: 241 gcttaacattttctaaaatttgaggggaaacccaatactgtagcctcatccaaagctaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttaacattttctaaaatttgaggggaaacccaatactgtagcctcatccaaagctaat 500
Query: 301 attatttttgttgttgttgttttgttttgtttg 333
|||||||||||||||||||||||||||||||||
Sbjct: 501 attatttttgttgttgttgttttgttttgtttg 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space: 236676
Effective search space used: 236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
