BAC Information

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BAC

Clone NameMSMg01-178M10
Chromosome3 (Build37)
Map Location 81,239,839 - 81,240,112
singlet/doubletsinglet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178M10.T7 (MSMg01no178_m10.b1)MSMg01-178M10.TJ (MSMg01no178_m10.g1)
ACCAG372762AG372763
length831706
length of high quality
(start - end)
276 (46 - 321)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no178_m10.b1 PHD_FILE: MSMg01no178_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:38 2005CHROMAT_FILE: MSMg01no178_m10.g1 PHD_FILE: MSMg01no178_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACAAAGACCCTTGTTGAATTCCCCAGGTGCAAATAGAAAAGGCT
TCACTCAAGAAGATTATGAAGGGTATAGGAGCATTGTATCTGAAATACAA
GCTAGAATACACTAATTGCCATCATAAAAGGTTTGAAGATGGTTGAGAGG
ATTAGAAAGAGACATCTGAAGAAGGTGAAATTTGAACAGGTGGTCTTCTA
GGATAAGTACAATCTTGCCATGATGTCTGGGAAGGAGAAAAGAGAGCAAG
GATTCCTGAGAGCAGATGATGCATTAATAATATCAAAAAAAAAGCTATAC
GATGCGCCCTTGTTTTGGGTCCTGCGATACTGCTGTTCATATCCTCTTTT
TTTTGCTTATTCCCTTAATACTCTACCCCCCCCCTTTACTATAATTACTC
TCTCCGTTGGGCCTTGGCATCCCAATTAAACTTCACTTCTTGCAAATATT
AAACAATCCTTGATACCCTTTTCTCAATTTCATTATTCGGCATTTTTTCA
TCCTTTAACACATTTTCCACTTTTGGGGCTTCTCACACTTTTTAAGGTTG
CACAGGCTACAAAAACGGCGAATCTCTGTATGTGTTTTCGCCCACCCCCC
CCCCCCCCCTGTTTCCCCCTTTTATTTTTTTTGTTCCCTCTATTTACTTC
TCTTTATATCCCCCTTTTTTTATTATATTACCCCATAACCCTTACATTTT
GATCTATATGTCCCTTTCCCCATATAAACTCCTCCCTCTTACTAATATAG
TTAACAACTATAACGACTTCTTTACCCCTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATCTCTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGAACATAGTACTACCGGAGGAT
CCAGCATTTTCTCTCCTGCCCCACCATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGTATGAATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAATCATTCTCAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCACAATCTAGGATACCCTCGATATGTGATACACTTCC
CTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_m10.b1 MSMg01no178_m10.b1 CHROMAT_FILE:
MSMg01no178_m10.b1 PHD_FILE: MSMg01no178_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:38 2005
         (276 letters)



>mm_chr3_81239635_81240314
          Length = 680

 Score =  499 bits (258), Expect = e-146
 Identities = 269/274 (98%), Gaps = 4/274 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacaaagacccttgttgaattccccaggtgcaaatagaaaaggcttcactcaag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacaaagaaccttgttgaattccccaggtgcaaatagaaaaggcttcactcaag 264

                                                                       
Query: 65  aagattatgaagggtatag---gagcattgtatctgaaatacaagctagaatacactaat 121
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagattatgaagggtatagttggagcattgtatctgaaatacaagctagaatacactaat 324

                                                                       
Query: 122 tgccatcataaaaggtttgaagatggttgagaggattagaaa-gagacatctgaagaagg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tgccatcataaaaggtttgaagatggttgagaggattagaaaagagacatctgaagaagg 384

                                                                       
Query: 181 tgaaatttgaacaggtggtcttctaggataagtacaatcttgccatgatgtctgggaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaaatttgaacaggtggtcttctaggataagtacaatcttgccatgatgtctgggaagg 444

                                             
Query: 241 agaaaagagagcaaggattcctgagagcagatga 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaaagagagcaaggattcctgagagcagatga 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 680
Length adjustment: 9
Effective length of query: 267
Effective length of database: 671
Effective search space:   179157
Effective search space used:   179157
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)