BAC Information

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BAC

Clone NameMSMg01-178M15
Chromosome3 (Build37)
Map Location 113,914,333 - 113,914,785
singlet/doubletsinglet
Overlap geneCol11a1
Upstream geneOTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178M15.T7 (MSMg01no178_m15.b1)MSMg01-178M15.TJ (MSMg01no178_m15.g1)
ACCAG372772AG372773
length701692
length of high quality
(start - end)		549 (46 - 594)537 (73 - 609)
definitionCHROMAT_FILE: MSMg01no178_m15.b1 PHD_FILE: MSMg01no178_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:39 2005CHROMAT_FILE: MSMg01no178_m15.g1 PHD_FILE: MSMg01no178_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTTATACTTTGGTTGTGGTTTAACTGTAATCCTCTCACCTGTG
AGCATTATGTTTATCCATGAGGAATAAAGCTCCATCCAAATTAGGATCGG
GTGGGCGTGAGCCCAAATCCCACATGTGTCATCACATCTTAGTAATCTCA
GTGGTATAATCAACACTTTTTCATGAGTAACGAAAGAAGGTGATTGGCAT
GTCAGCTCAGTGGCTATATCATTTATGTGTGCACTTGCATCTGCACAAGT
ATGTGTAATTGTGTGGAAGGCAATGGTCAATGTTTGATGTATCTTTCTAA
CTCCCCACCTTGCGTTTTGAGACAGAGTCTCTCAGTGTACCTGGAGCTAA
TCCATCCATTCAGACACACAGACAGGCTGCCTGGTGAGCTCTTGTAATAC
TTTTGCCTCCTCTCTGGCAAAGTTAGGATTTTAGATATGTTCATCCATAA
CCAGCTTTTGTGGGAGAGCTAGGGATCAAAACTCGTGTCTGTCTTTATGC
TCACTGAGCCTTCTCTCCAGTCCCTCTTAAAACATAAAAAGCTCANATGG
ATTTAGTACTAGAGAGTTTAAAAGTACAGTAACATCTAACTCTTTAACAT
TGAATACTGCATATAATCTGGAGAATTTCTTTAAACTTCTTTGGCTTCTA
N

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATATGAAAAGCAAAATATTATTTTTTG
GGGACATTAGCTCCTTACCTTCTTTGCTCTCTGTCTGTCTGTTTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCGTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTCTTTCCTTCCTTTCTCCCTTCTTTCTTTCTTT
CCTTCTTTCTCTCTCTCTTCCTCTTTCTTTCTTTCTTTCCTTCTTTCTCT
CTCTCTTCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTCCTTTCTTTCTTGACTTCTTTGTTTTATTTATTTTTCTT
TCCTTCTCTCTTTCTTTCTATATCTCCCTCCCTCTATCTCTTCCTCAGTC
TATCTGTCTGTCTCTAACTTCCCCCTTTCTTTCTTCTTGCTATGAGGGTC
TCCCTCTGCAGTTCAGGCTGGTTCTCAAACTAATGACCATTCTGTCACAG
CCCCCTAAGAAAACACCACACCTTGTTCTAAAGTATTTTCAAAATATGTT
TATCTTGGGACTCATTACAGTTTCCTACATTTTCTGATCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_m15.b1 MSMg01no178_m15.b1 CHROMAT_FILE:
MSMg01no178_m15.b1 PHD_FILE: MSMg01no178_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:39 2005
         (549 letters)



>mm_chr3_113914333_113915281
          Length = 949

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcttatactttggttgtggtttaactgtaatcctctcacctgtgagcattatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaattcctcttatactttggttgtggtttaactgtaatcctctcacctgtgagcattatg 394

                                                                       
Query: 65  tttatccatgaggaataaagctccatccaaattaggatcgggtgggcgtgagcccaaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttatccatgaggaataaagctccatccaaattaggatcgggtgggcgtgagcccaaatc 334

                                                                       
Query: 125 ccacatgtgtcatcacatcttagtaatctcagtggtataatcaacactttttcatgagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ccacatgtgtcatcacatcttagtaatctcagtggtataatcaacactttttcatgagta 274

                                                                       
Query: 185 acgaaagaaggtgattggcatgtcagctcagtggctatatcatttatgtgtgcacttgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acgaaagaaggtgattggcatgtcagctcagtggctatatcatttatgtgtgcacttgca 214

                                                                       
Query: 245 tctgcacaagtatgtgtaattgtgtggaaggcaatggtcaatgtttgatgtatctttcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tctgcacaagtatgtgtaattgtgtggaaggcaatggtcaatgtttgatgtatctttcta 154

                                                                       
Query: 305 actccccaccttgcgttttgagacagagtctctcagtgtacctggagctaatccatccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 actccccaccttgcgttttgagacagagtctctcagtgtacctggagctaatccatccat 94

                                                                       
Query: 365 tcagacacacagacaggctgcctggtgagctcttgtaatacttttgcctcctctctggca 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tcagacagacagacaggctgcctggtgagctcttgtaatacttttgcctcctctctggca 34

                                            
Query: 425 aagttaggattttagatatgttcatccataacc 457
           |||||||||||||||||||||||||||||||||
Sbjct: 33  aagttaggattttagatatgttcatccataacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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